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Trim Reads of Tandem Repeats
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Jonathan-Richards/TRTR
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/* * TRTR: Trim Reads of Tandem Repeats * * This tool removes tandem repeats from ends of unaligned sequencing * reads (leaving one copy). This prevents reads that don't span the * repeated region from overlapping and leading to innaccurate SNPs * calls. * * The maximimum repeat length is adjustable (use 1 to trim only * homopolymers). * * The "aggressive" option should not be touched in general. Setting to * 0 will prevent the program from trimming to exactly 1 copy of the * repeat, instead leaving between 1 and 2 copies. Why this would be * useful, I don't know. * * This program could also be a useful first step before assembly. More * testing needs to be done. * * Future updates will add the capability for trimming reads in aligned * BAM files. */
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