make readthedocs pass (#126)

Hotfix to autoupdate https://doubletdetection.readthedocs.io/en/latest/index.html

docs/conf.py

@@ -12,43 +12,46 @@
 #
 import os
 import sys
-sys.path.insert(0, os.path.abspath('..'))
 
+sys.path.insert(0, os.path.abspath(".."))
+sys.path.append(os.path.dirname(__file__))
 
 # -- Project information -----------------------------------------------------
 
-project = 'DoubletDetection'
-copyright = '2019, Adam Gayoso and Jonathan Shor'
-author = 'Adam Gayoso and Jonathan Shor'
+project = "DoubletDetection"
+copyright = "2019, Adam Gayoso and Jonathan Shor"
+author = "Adam Gayoso and Jonathan Shor"
 
 # The full version, including alpha/beta/rc tags
-release = '2.4.0'
+release = "2.5.0"
 
 
 # -- General configuration ---------------------------------------------------
 
 # Add any Sphinx extension module names here, as strings. They can be
 # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
 # ones.
-extensions = ['sphinx.ext.autodoc', 'sphinx.ext.viewcode', 'sphinx.ext.napoleon', 'm2r']
+extensions = ["sphinx.ext.autodoc", "sphinx.ext.viewcode", "sphinx.ext.napoleon", "m2r"]
 
 # Add any paths that contain templates here, relative to this directory.
-templates_path = ['_templates']
+templates_path = ["_templates"]
 
 # List of patterns, relative to source directory, that match files and
 # directories to ignore when looking for source files.
 # This pattern also affects html_static_path and html_extra_path.
-exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
+exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"]
 
 
 # -- Options for HTML output -------------------------------------------------
 
 # The theme to use for HTML and HTML Help pages.  See the documentation for
 # a list of builtin themes.
 #
-html_theme = 'sphinx_rtd_theme'
+html_theme = "sphinx_rtd_theme"
 
 # Add any paths that contain custom static files (such as style sheets) here,
 # relative to this directory. They are copied after the builtin static files,
 # so a file named "default.css" will overwrite the builtin "default.css".
-html_static_path = ['_static']
+html_static_path = ["_static"]
+
+master_doc = "index"

docs/requirements.txt

@@ -0,0 +1,10 @@
+m2r
+matplotlib
+numpy
+pandas
+scipy
+sklearn
+tables
+git+https://github.com/JonathanShor/PhenoGraph
+umap-learn
+scanpy

readthedocs.yaml

@@ -0,0 +1,6 @@
+build:
+  image: latest
+python:
+  version: 3.7
+  install:
+    - requirements: docs/requirements.txt