R code for the project covid19 in rasi

The aim of this R code is to be transparant and document the data handling and statistical analyses performed for the project.

Language

English.

Data

The data consists of Swedish individual patient data and is not public, and therefore no data is stored in this repository.

Instructions

The project uses the R package projectTemplate, http://projecttemplate.net/ and is structured (and run) accordingly. Renv, https://rstudio.github.io/renv/articles/renv.html, is used for management of package dependencies.

Since the data is not available the code can not be run as is.

Workflow:

1. Run src/load_munge_cache.R or set loading and munging options in ProjectTemplate::reload.project() to TRUE in reports/Statistical_report_XX.Rmd

2. Knit reports/Statistical_report_XX.Rmd

Publication

https://doi.org/10.1002/ejhf.2060