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KPMP-5561: comment out the test file for now
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src/components/SpatialViewer/viewConfigHelper.test-old.js
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,235 @@ | ||
| // import { | ||
| // getViewConfig, | ||
| // populateViewConfig, | ||
| // getDatasetInfo, | ||
| // getImageTypeTooltipCopy, | ||
| // getPublicFileLink | ||
| // } from './viewConfigHelper'; | ||
| // import lmViewConfig from './lightMicroscopyViewConfig.json'; | ||
| // import threeDCytometryViewConfig from './threeDCytometryViewConfig.json'; | ||
| // import threeDCytometryViewNoChannelsConfig from './threeDCytometryViewNoChannelsConfig.json'; | ||
| // import stViewConfig from './spatialTranscriptomicsViewConfig.json'; | ||
| // import * as helpers from '../../helpers/Api'; | ||
|
|
||
| // export const mockDatabase = { | ||
| // collections: { | ||
| // get: jest.fn(), | ||
| // }, | ||
| // }; | ||
|
|
||
| // jest.mock('@hms-dbmi/viv', () => ({ | ||
| // ...jest.requireActual('@hms-dbmi/viv'), | ||
| // Modal: jest.fn(), | ||
| // Database: jest.fn(() => mockDatabase), | ||
| // Q: { | ||
| // sqlite: { | ||
| // openDatabase: jest.fn(), | ||
| // }, | ||
| // }, | ||
| // })); | ||
|
|
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| // describe('getViewConfig', () => { | ||
| // it('should return 3dCyto config when 3D Cytometry', () => { | ||
| // let config = getViewConfig('3D Cytometry'); | ||
| // let expectedConfig = threeDCytometryViewConfig; | ||
|
|
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| // expect(config).toEqual(expectedConfig); | ||
|
|
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| // }); | ||
| // it ('should return light microscopy config when Light Microscopic Whole Slide Images', () => { | ||
| // let config = getViewConfig('Light Microscopic Whole Slide Images'); | ||
| // let expectedConfig = lmViewConfig; | ||
|
|
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| // expect(config).toEqual(expectedConfig); | ||
| // }); | ||
| // it ('should return spatial transcriptopmics config when Spatial Transcriptomics', () => { | ||
| // let config = getViewConfig('Spatial Transcriptomics'); | ||
| // let expectedConfig = stViewConfig; | ||
|
|
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| // expect(config).toEqual(expectedConfig); | ||
| // }); | ||
| // it ('should return no channel 3dcyto config when given 3d cyto no channel', () => { | ||
| // let config = getViewConfig('3D Tissue Imaging and Cytometry No Channels'); | ||
| // let expectedConfig = threeDCytometryViewNoChannelsConfig; | ||
|
|
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| // expect(config).toEqual(expectedConfig); | ||
| // }); | ||
| // it ('should return 3dcyto config when CODEX', () => { | ||
| // let config = getViewConfig('CODEX'); | ||
| // let expectedConfig = threeDCytometryViewConfig; | ||
|
|
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| // expect(config).toEqual(expectedConfig); | ||
| // }); | ||
| // it ('should default to 3dcyto when unknown type', () => { | ||
| // let config = getViewConfig('garbage'); | ||
| // let expectedConfig = threeDCytometryViewConfig; | ||
|
|
||
| // expect(config).toEqual(expectedConfig); | ||
| // }); | ||
| // }); | ||
|
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| // describe ('populateViewConfig', () => { | ||
| // beforeEach(() => { | ||
|
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| // let mockUtilFunction = jest.spyOn(helpers, 'getFileLink').mockImplementation(() => { | ||
| // let result = {}; | ||
| // result.data='url/returned/from/service'; | ||
| // return result; | ||
| // }); | ||
| // }); | ||
|
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||
| // it('should replace all of the placeholder values with the values passed in', async () => { | ||
| // let selectedDataset = { | ||
| // 'filename': 'imageName.tiff', | ||
| // 'packageid': '123', | ||
| // 'imagetype': 'stuff', | ||
| // 'relatedfiles': [] | ||
| // }; | ||
| // let result = await populateViewConfig(threeDCytometryViewConfig, selectedDataset); | ||
| // let resultString = JSON.stringify(result); | ||
| // let index = resultString.search('<*>'); | ||
|
|
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| // expect(index).toBe(-1); | ||
|
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| // expect(result.datasets[0].files[0].options.images[0].name).toEqual('imageName.tiff'); | ||
| // expect(result.datasets[0].files[0].options.images[0].url).toEqual('url/returned/from/service'); | ||
| // expect(result.description).toEqual('stuff'); | ||
| // }); | ||
|
|
||
| // it('should replace all of the placeholder values with the values passed in for spatial transcriptomics', async () => { | ||
| // let selectedDataset = { | ||
| // 'filename': 'imageName.tiff', | ||
| // 'packageid': '123', | ||
| // 'imagetype': 'stuff', | ||
| // 'relatedfiles': ['{"filename": "file.zarr"}'] | ||
| // }; | ||
| // let result = await populateViewConfig(stViewConfig, selectedDataset); | ||
| // let resultString = JSON.stringify(result); | ||
| // let index = resultString.search('<*>'); | ||
|
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| // expect(index).toBe(-1); | ||
|
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| // expect(result.datasets[0].files[2].options.images[0].name).toEqual('imageName.tiff'); | ||
| // expect(result.datasets[0].files[2].options.images[0].url).toEqual('url/returned/from/service'); | ||
| // expect(result.datasets[0].files[0].url).toEqual('https://kpmp-knowledge-environment-public.s3.amazonaws.com/123/derived/file.zarr'); | ||
| // expect(result.datasets[0].files[1].url).toEqual('https://kpmp-knowledge-environment-public.s3.amazonaws.com/123/derived/file.zarr'); | ||
| // expect(result.description).toEqual('stuff'); | ||
| // }); | ||
|
|
||
| // it('should handle missing Image Type', async () => { | ||
| // let selectedDataset = { | ||
| // 'filename': 'imageName.tiff', | ||
| // 'relatedfiles': [] | ||
| // }; | ||
| // let result = await populateViewConfig(threeDCytometryViewConfig, selectedDataset); | ||
| // let resultString = JSON.stringify(result); | ||
| // let index = resultString.search('<*>'); | ||
| // expect(index).toBe(-1); | ||
| // expect(result.description).toEqual(''); | ||
| // }); | ||
|
|
||
| // }); | ||
|
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| // describe ('getDatasetInfo', () => { | ||
| // it('should return whole slide image string with level included', () => { | ||
| // const selectedDataset = { | ||
| // "datatype": "Light Microscopic Whole Slide Images", | ||
| // "imagetype": "Jones' Methenamine Silver (SIL) histochemical stain", | ||
| // "level": "L12" | ||
| // } | ||
|
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| // let datasetInfo = getDatasetInfo(selectedDataset); | ||
| // let expectedInfo = "Jones' Methenamine Silver (SIL) histochemical stain (L12)"; | ||
|
|
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| // expect(datasetInfo).toBe(expectedInfo); | ||
| // }); | ||
| // it('should return whole slide image string without level included', () => { | ||
| // const selectedDataset = { | ||
| // "datatype": "Light Microscopic Whole Slide Images", | ||
| // "imagetype": "Jones' Methenamine Silver (SIL) histochemical stain", | ||
| // } | ||
|
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| // let datasetInfo = getDatasetInfo(selectedDataset); | ||
| // let expectedInfo = "Jones' Methenamine Silver (SIL) histochemical stain"; | ||
|
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| // expect(datasetInfo).toBe(expectedInfo); | ||
| // }); | ||
| // it('should return a Label-free auto-fluorescent image', () => { | ||
| // const selectedDataset = { | ||
| // "datatype": "Label-free auto-fluorescent image", | ||
| // "imagetype": "Jones' Methenamine Silver (SIL) histochemical stain", | ||
| // } | ||
|
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| // let datasetInfo = getDatasetInfo(selectedDataset); | ||
| // let expectedInfo = "Jones' Methenamine Silver (SIL) histochemical stain"; | ||
|
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| // expect(datasetInfo).toBe(expectedInfo); | ||
| // }); | ||
| // it('should return an empty string if image type not present for 3d Cyto', () => { | ||
| // const selectedDataset = { | ||
| // "datatype": "Label-free auto-fluorescent image", | ||
| // } | ||
|
|
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| // let datasetInfo = getDatasetInfo(selectedDataset); | ||
| // let expectedInfo = ""; | ||
|
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| // expect(datasetInfo).toBe(expectedInfo); | ||
| // }); | ||
| // it('should return an empty string if image type not present for Whole slide image', () => { | ||
| // const selectedDataset = { | ||
| // "datatype": "Light Microscopic Whole Slide Images", | ||
| // } | ||
|
|
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| // let datasetInfo = getDatasetInfo(selectedDataset); | ||
| // let expectedInfo = ""; | ||
|
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| // expect(datasetInfo).toBe(expectedInfo); | ||
| // }); | ||
| // }) | ||
|
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| // describe('getPublicFileLink',() => { | ||
| // it('should generate the url', () => { | ||
| // let fileLink = getPublicFileLink("12345", "filename"); | ||
| // expect(fileLink).toBe('https://kpmp-knowledge-environment-public.s3.amazonaws.com/12345/derived/filename'); | ||
| // }); | ||
| // }); | ||
|
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| // describe('getImageTypeTooltipCopy',() => { | ||
| // it('should return empty when copy not available', () => { | ||
| // const expectedCopy = ''; | ||
| // const copy = getImageTypeTooltipCopy(''); | ||
| // expect(copy).toBe(expectedCopy); | ||
| // }); | ||
|
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| // it('should return empty when copy not available', () => { | ||
| // const expectedCopy = ''; | ||
| // const copy = getImageTypeTooltipCopy('AS(DJ9asdjasd'); | ||
| // expect(copy).toBe(expectedCopy); | ||
| // }); | ||
|
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| // it('should return copy for RGB max projection of 8-channel immunofluorescence image volume', () => { | ||
| // const expectedCopy = '8-channel volume combined into a single maximum projection and converted to RGB color space.'; | ||
| // const copy = getImageTypeTooltipCopy('RGB max projection of 8-channel immunofluorescence image volume'); | ||
| // expect(copy).toBe(expectedCopy); | ||
| // }); | ||
|
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| // it('should return copy for Composite max projection of 8-channel immunofluorescence image volume', () => { | ||
| // const expectedCopy = '8-channel volume combined into a single maximum projection; composite image consists of 8 channels.'; | ||
| // const copy = getImageTypeTooltipCopy('Composite max projection of 8-channel immunofluorescence image volume'); | ||
| // expect(copy).toBe(expectedCopy); | ||
| // }); | ||
|
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| // it('should return copy for Composite 3D 8-channel immunofluorescence image volume', () => { | ||
| // const expectedCopy = '3D volume completely represented as a stack of individual, 8-channel images. Every focal plane image and every channel can be independently inspected.'; | ||
| // const copy = getImageTypeTooltipCopy('Composite 3D 8-channel immunofluorescence image volume'); | ||
| // expect(copy).toBe(expectedCopy); | ||
| // }); | ||
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| // it('should return copy for RGB max projection of 2-channel (autofluorescence and second harmonic generation) image volume', () => { | ||
| // const expectedCopy = 'Projection of 3D volume collected prior to labeling; channels cannot be controlled.'; | ||
| // const copy = getImageTypeTooltipCopy('RGB max projection of 2-channel (autofluorescence and second harmonic generation) image volume'); | ||
| // expect(copy).toBe(expectedCopy); | ||
| // }); | ||
|
|
||
| // }); | ||
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