Deleted unnecessary files, added auto-update RcppExports

.github/workflows/autoreconf.yml

@@ -15,17 +15,22 @@ jobs:
         ref: 'dev'
 
     - name: Set up Autotools
-      run: sudo apt-get update && sudo apt-get install -y autoconf automake libtool sed r-base r-cran-rcppeigen g++ libeigen3-dev python3-pybind11 libgsl-dev
+      run: sudo apt-get update && sudo apt-get install -y autoconf r-base r-cran-rcppeigen r-cran-rcppprogress g++ libeigen3-dev python3-pybind11 libgsl-dev
 
     - name: Run autoreconf
       run: |
         autoreconf -fiv
         ./configure
+    - name: Rcpp compileAttributes
+      run: |
+        Rscript -e "Rcpp::compileAttributes()"
 
     - name: Push to Main Branch
       run: |
         git config --global user.name 'GitHub Action'
         git config --global user.email '[email protected]'
         git add configure DESCRIPTION VERSION docs/sphinx/conf.py
+	git add src/RcppExports.cpp R/RcppExports.R
+	git rm -f DESCRIPTION.in
         git commit -m "Auto-update Autotools files" || echo "No changes to commit"
         git push origin HEAD:main -f

configure.ac

@@ -1,7 +1,7 @@
 AC_INIT([scdemon], [0.0.3])
 
-AC_MSG_NOTICE([Creating VERSION file])
-echo m4_defn([AC_PACKAGE_VERSION]) > VERSION
+dnl AC_MSG_NOTICE([Creating VERSION file])
+dnl echo m4_defn([AC_PACKAGE_VERSION]) > VERSION
 
 : ${R_HOME=$(R RHOME)}
 if test -z "${R_HOME}"; then