remove knowcloud link and update to KN-20rep-1706

KnowEnG · Oct 26, 2017 · f27ac45 · f27ac45
1 parent 7e841c9
commit f27ac45
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diff --git a/Dockerfile b/Dockerfile
@@ -18,7 +18,7 @@ RUN apt-get update && apt-get install -y \
     python3-pip
 
 RUN pip3 install awscli
-RUN wget -O /home/credentials http://knowcloud.cse.illinois.edu/index.php/s/E3OL5QpTj8SrOix/download
+RUN wget -O /home/credentials http://veda.cs.uiuc.edu/RWR/tmp/kn_s3reader_creds
 COPY kn_fetcher.sh /home/
 RUN chmod 775 /home/kn_fetcher.sh
 

diff --git a/Dockstore.cwl b/Dockstore.cwl
@@ -25,7 +25,7 @@ inputs:
     label: "AWS S3 Bucket Name"
     doc: "the aws s3 bucket"
     type: string
-    default: "KnowNets/KN-6rep-1611/userKN-6rep-1611"
+    default: "KnowNets/KN-20rep-1706/userKN-20rep-1706"
     inputBinding:
       position: 1
   - id: network_type

diff --git a/README.md b/README.md
@@ -25,7 +25,7 @@ manually you would execute:
 $ docker run -it -w='/home/ubuntu' -v `pwd`:/home/ubuntu quay.io/cblatti3/kn_fetcher:latest
 
 # run command within the docker container
-$ /home/kn_fetcher.sh KnowNets/KN-6rep-1611/userKN-6rep-1611 Property 9606 pfam_domains
+$ /home/kn_fetcher.sh KnowNets/KN-20rep-1706/userKN-20rep-1706 Property 9606 pfam_domains
 ```
 You'll then see a file, `9606.pfam_domains.edge`, in the current directory, that's the report file. The `-v` is used to mount this result out of the container.
 

diff --git a/kn_fetcher.cwl b/kn_fetcher.cwl
@@ -20,7 +20,7 @@ inputs:
     label: "AWS S3 Bucket Name"
     doc: "the aws s3 bucket"
     type: string
-    default: "KnowNets/KN-6rep-1611/userKN-6rep-1611"
+    default: "KnowNets/KN-20rep-1706/userKN-20rep-1706"
     inputBinding:
       position: 1
   - id: network_type