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62 Open 19 Closed
62 Open 19 Closed
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Issues list

ingest BacDive "sample type" data
#192 opened Jul 2, 2024 by realmarcin
link Bacdive isolation source categories to each other to represent hierarchy
#191 opened Jul 1, 2024 by realmarcin
1
KG- microbe hub hierarchy enhancement New feature or request
#185 opened Jun 26, 2024 by hrshdhgd
1
validate Omnimicrobe text mined data
#183 opened Jun 20, 2024 by realmarcin
ingest PREGO knowledgebase data sources
#182 opened Jun 20, 2024 by realmarcin
IJSEM phenotype db data sources
#180 opened Jun 19, 2024 by realmarcin
ingest microbeatlas environments data sources
#177 opened Jun 12, 2024 by realmarcin
mix of knowledge_source and primary_knowledge_source for edges files, even for ontologies
#166 opened Apr 29, 2024 by realmarcin
thermobase
#159 opened Apr 4, 2024 by realmarcin
Astrobiology Habitable Environments Database (AHED)
#158 opened Apr 4, 2024 by realmarcin
ingest some ATCC genome entry fields data sources
#154 opened Apr 2, 2024 by realmarcin
Don't put generic code in this repo data sources
#151 opened Mar 29, 2024 by cmungall
import RO relation for biolink predicate from biolink model
#148 opened Mar 28, 2024 by realmarcin
Is it possible/recommended to get the microbial traits at the Genus level?
#145 opened Mar 27, 2024 by sayalaruano
1
ingest bugbase phenotypes and predictions data sources
#141 opened Mar 21, 2024 by realmarcin
ingest BugSigDB data sources
#140 opened Mar 20, 2024 by realmarcin
ingest Names4Life data sources
#132 opened Mar 9, 2024 by realmarcin
refactor ECOCORE to PATO terms
#131 opened Mar 6, 2024 by realmarcin
filter out viruses from NCBI Taxonomy 'unclassified'
#126 opened Feb 26, 2024 by realmarcin
1
ingest the EC hierarchy data sources
#114 opened Feb 15, 2024 by realmarcin
3
look at FermentationExplorer data integration
#110 opened Feb 13, 2024 by realmarcin
use Taxallnomy to complete taxonomic lineages
#104 opened Jan 31, 2024 by realmarcin
NCBITaxon file ncbitaxon_removed_subset.json is not downloaded before Uniprot api is queried
#96 opened Jan 13, 2024 by bsantan
1
unmatched BacDive taxa vs NCBITaxon data sources
#87 opened Jan 8, 2024 by realmarcin
add transpoter hierarchy from TCDB data sources
#86 opened Dec 7, 2023 by realmarcin
ProTip! Exclude everything labeled bug with -label:bug.