DISK

Installation

1. Clone the repository https://github.com/IKCAP/DISK.git

git clone https://github.com/IKCAP/DISK.git

2. Setup

   2.1 For Development

   python setup.py develop

   2.1 For Installation

   python setup.py install

Configuring

Create a file .labkey-config.txt, with 4 entries

[default]

; URL of Labkey server; including the context path
base-url     = https://example.domain.com:8443/labkey

; Labkey credentials
username     = <username>

; Labkey credentials
password     = <password>

; Labkey project name
project-name = <project>

The tool loads configuration in following order

1. From .labkey-config.txt file in the user's home directory
2. .labkey-config.txt file in current directory.
3. File passed as through the command line's --config option.
4. Command line arguments for each option.

MS2 Analysis Configuration

In .labkey-config.txt, add a section as follows

[ms2]

; Default search engine to use
search-engine     = <search-engine>

; Server directory where the input file should be uploaded
input-location    = <input-locaiton>

; Server directory where the FASTA file should be uploaded
fasta-location    = <fasta-file-locaiton>

; Server directory where the protocol file should be uploaded
; DO NOT CHANGE THIS
protocol-location = .labkey/protocols/%(search-engine)s/