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The directory output directive has been replaced with the outputDir config option and -output-dir command line option, which is results by default. The other directives such as mode have been replaced with config options under workflow.output.*.
$ /software/nextflow/current/nextflow tumorNormalONT.nf
N E X T F L O W ~ version 24.10.1
Launching `tumorNormalONT.nf` [happy_bhaskara] DSL2 - revision: 09395b075e
ERROR ~ Script compilation error
- file : /home/byoo/src/longread_somatic_nf/tumorNormalONT.nf
- cause: Invalid publish target definition @ line 88, column 5.
directory params.outdir
^
1 error
The text was updated successfully, but these errors were encountered:
Thanks Byunggil! Just wanted to confirm that we received this. We are making a lot of revisions in the pipeline now, and will test the newer Nexflow version as well.
Hello, I'd like to report that nextflow 24.10.1 couldn't compile the workflow. This looks to be caused by the change in nextflow
24.10
https://nextflow.io/docs/latest/workflow.html#migrating-from-first-preview
The directory output directive has been replaced with the outputDir config option and -output-dir command line option, which is results by default. The other directives such as mode have been replaced with config options under workflow.output.*.
The text was updated successfully, but these errors were encountered: