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1. Ragout Ragout Public

   Chromosome-level scaffolding using multiple references

   Python 158 28

2. maf2synteny maf2synteny Public

   A tool for recovering synteny blocks from multiple alignment

   C++ 29 7

3. KolmogorovLab/hapdup KolmogorovLab/hapdup Public

   Pipeline to convert a haploid assembly into diploid

   Python 93 10

4. pbclip pbclip Public

   A simple tool to fix PacBio fasta/q that was not properly split into subreads

   C++ 14 1

5. KolmogorovLab/hapdiff KolmogorovLab/hapdiff Public

   SV calling for diploid assemblies

   Python 23 3

6. Flye Flye Public

   De novo assembler for single molecule sequencing reads using repeat graphs

   C 791 168