Support for T2T: generate Refseq and transcriptome data. #10
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This requires the bigBedToBed executable (downloaded by the script). The bed file for refseq has columns permutated so some rearrangement is needed.
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T2T support by updating refseq and transcriptome data generation. Some minor changes into the main script file to accomodate this new genome (command-line options).
T2T does not provide exactly the same RefSeq curated bed file. We download a BigBed file, convert it to bed and store it as RData using some columns permutations. Transcriptome data is generated likewise.
Note: