Releases of parameter sets without LEEF specification, refer to the first LEEF experiment.

v2.3.9-LEEF-2: Update flowcam.yml: species tracked finalized

v2.3.8-LEEF-2: New bemovi classifier for 25x and 16x videos, and new Flowcam classifier. The following classes are no longer tracked: airbubbles, Cryptomonas. The .yml changed accordingly.

v2.3.7-LEEF-2: new bemovi classifier for 25x and 16x videos

v2.3.6-LEEF-2: flowcytometer: new gates_cordinates.

v2.3.5-LEEF-2: flowcam.yml: added "Small_cells" to species tracked

v2.3.3-LEEF-2: Change of flowcytometer dilutions

v2.3.2-LEEF-2: Flowcam classifier uses now small letters as trait names

v2.3.1-LEEF-2: Add size standards and FSC A to size conversion parameter

v2.3.0-LEEF-2: Update of LEEF 2 classifiers and change in flowcam species

v2.2.2-LEEF-2: changes to flowcytometer and flowcam

• removed parameter/0.raw.data/flowcam/flowcam_dilution.csv as added manually anyway and differs between days
• updated parameter/0.raw.data/flowcytometer/metadata_flowcytometer.csv
• added treatment/stressor_levels.csv

v2.2.0-LEEF-2: Dilution rates in flowcytometer changed

v2.1.1-LEEF-2

• changed README.md

v2.1.0-LEEF-2

• change inbemovi.mag.25 parameter and tracked species
• removal of LEEF-1 treatment files

v2.0.5-LEEF-2

• changed dilution factors for flowcytometer and flowcam

v2.0.4-LEEF-2

• added missing flowcam.yml

v2.0.3-LEEF-2

• added missing .rds to classifiers in bemovi_mag_25

v2.0.2-LEEF-2

• added missing return to flowcam.yml
• fixed typo in experimental design (bottles instead of bottle)

v2.0.1-LEEF-2: Final changes

• Formating change in conductivity.xlsx
• added directories with dummy files in flowcytometer

v2.0.0-LEEF-2: initial release for LEEF-2

v1.6.1: Added flowcam classifier for bottle b_05

Bottle b_05 has been contaminated at 20220504. b_05 should be classified after that date using this classifier svm_flowcam_classifiers_B02_contaminated_after_20220504_20220710_MergedData.rds for the flowcam.

v1.6.0: Classifier including all videos and images from the beginning of the experiment

v1.5.1: Fix wrong tracked_species in yaml files

v1.5.0: new classifiers for flowcam and videos.

These classifiers use all stock culture data recorded up to date (April 2022). tests have qualitatively shown that the within treatment variance is bigger than the variance across treatments, meaning that there is only 1 classifier respectively for the flowcam, the videos 25x and the videos 16x, i.e. no different classifiers for different treatments (light vs decreasing light).

v1.4.0 Flowcam updated for light at 18% increasing and constant

These classifiers use data from early February 2022 (and only this data, as discussed), when the light was either constant or at 18% (decreasing). Hence (if I'm not mistaken) these classifiers are to be used for the period of time where the light was between 24% and 12% (values included) (resp. constant in the control).

v1.3.0 DO NOT USE _ NOT CORRECT

v1.2.1: Corrected bemovi 16x classifier

v1.2.0: Classifiers and corresponding yml files updated

v1.1.2: add 'instrument' field to 'flowcam_dilution.csv' file

v1.1.1: rename classifier_cropped to non_cropped

v1.1.0: added additional bemovi 25 classifier_cropped analysis where same

classifiers as in

cropped are used, but the video is NOT cropped.

v1.0.1: added 'filtration' and 'flowcell' columns to the file

'flowcam/flowcam_dilution.csv' These are carried through to the table 'flowcam__algae_traits' in the RRD database

v1.0: Parameter for first temperature steps in LEEF experiment 18 degrees

https://github.com/LEEF-UZH/LEEF.parameter/releases/tag/1.0

v0.9: Parameter for 30 samples

The github repository can be found at [https://github.com/LEEF-UZH/LEEF.parameter](https://github.com/LEEF-UZH/LEEF. parameter)