Merge pull request #1453 from LLNL/v0.10.1-RC

v0.10.1-RC merge to main for patch release
LLNL · Oct 22, 2024 · 6626ee1 · 6626ee1
2 parents ea853a3 + f640d0d
commit 6626ee1
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Showing 27 changed files with 1,161 additions and 342 deletions.
diff --git a/RELEASE b/RELEASE
@@ -1,6 +1,6 @@
 *******************************************************************************
 
-Axom: ................................, version 0.10.0
+Axom: ................................, version 0.10.1
 
 Copyright (c) 2017-2024, Lawrence Livermore National Security, LLC. 
 Produced at the Lawrence Livermore National Laboratory.

diff --git a/RELEASE-NOTES.md b/RELEASE-NOTES.md
@@ -17,6 +17,36 @@ The format of this file is based on [Keep a Changelog](http://keepachangelog.com
 
 The Axom project release numbers follow [Semantic Versioning](http://semver.org/spec/v2.0.0.html).
 
+## [Unreleased] - Release date yyyy-mm-dd
+
+###  Added
+
+###  Changed
+
+###  Deprecated
+
+###  Removed
+
+###  Fixed
+
+## [Version 0.10.1] - Release date 2024-10-22
+
+###  Added
+- Constructor to Axom BVH that avoids an unnecessary copy of each bounding box.
+
+###  Fixed
+- Issue with uninitialized state in axom::Array class was causing
+  host-initialization of device-allocated memory in certain situations. This
+  could cause warnings about uninitialized memory or crashes in the axom::Array
+  constructor.
+- Added a guard for sidre-related mint API usage in a quest example.
+- Removed `std::ends` usage from `SLIC_ASSERT`,`SLIC_ASSERT_MSG`,`SLIC_CHECK`,
+  and `SLIC_CHECK_MSG` macros that prevented Lumberjack from combining
+  messages.
+- Some line numbers linking file contents into the Axom Quickstart Guide were
+  incorrect causing the docs to appear incomplete.
+
+
 ## [Version 0.10.0] - Release date 2024-09-27
 
 ### Added
@@ -1099,7 +1129,8 @@ fractions for the associated materials must be supplied before shaping.
 - Use this section in case of vulnerabilities
 
 
-[Unreleased]:     https://github.com/LLNL/axom/compare/v0.10.0...develop
+[Unreleased]:     https://github.com/LLNL/axom/compare/v0.10.1...develop
+[Version 0.10.1]: https://github.com/LLNL/axom/compare/v0.10.0...v0.10.1
 [Version 0.10.0]: https://github.com/LLNL/axom/compare/v0.9.0...v0.10.0
 [Version 0.9.0]:  https://github.com/LLNL/axom/compare/v0.8.1...v0.9.0
 [Version 0.8.1]:  https://github.com/LLNL/axom/compare/v0.8.0...v0.8.1

diff --git a/azure-pipelines.yml b/azure-pipelines.yml
@@ -9,13 +9,15 @@ variables:
   DO_BUILD: 'yes'
   DO_TEST: 'yes'
   DO_CLEAN: 'no'
-  CLANG14_IMAGENAME: 'axom/tpls:clang-14_09-23-24_17h-07m'
-  GCC13_IMAGENAME: 'axom/tpls:gcc-13_09-23-24_17h-07m'
+  CLANG14_IMAGENAME: 'axom/tpls:clang-14_10-10-24_01h-31m'
+  GCC13_IMAGENAME: 'axom/tpls:gcc-13_10-10-24_01h-31m'
   system.debug: false
 
 jobs:
 - job: Build_and_Test
 
+  timeoutInMinutes: 90
+
   strategy:
     matrix:
       linux_gcc13:

diff --git a/host-configs/docker/[email protected] b/host-configs/docker/[email protected]
@@ -4,13 +4,13 @@
 # CMake executable path: /usr/local/bin/cmake
 #------------------------------------------------------------------------------
 
-set(CMAKE_PREFIX_PATH "/home/axom/axom_tpls/clang-14.0.0/umpire-2024.07.0-sm47io5l4xfgy3enimczrmiijsw4pdol;/home/axom/axom_tpls/clang-14.0.0/fmt-11.0.2-zxzr5ejl2icv2wkxrmytysohcwa56dym;/home/axom/axom_tpls/clang-14.0.0/raja-2024.07.0-wvpmv7ubnzad5frbffxkco37c4zwdh66;/home/axom/axom_tpls/clang-14.0.0/camp-2024.07.0-drhul62p64d42qwqnc6sbazwxudcgtzo;/home/axom/axom_tpls/clang-14.0.0/mfem-4.6.0-4khgoizhebqald4wsjiriiep2nsuqrj2;/home/axom/axom_tpls/clang-14.0.0/hypre-2.24.0-gmgla43c3i2sasbyvrzvvynfheah5dki;/home/axom/axom_tpls/clang-14.0.0/gmake-4.4.1-z6rav4bbtoxhlimk3lo3zuhcobg2p5l6;/home/axom/axom_tpls/clang-14.0.0/conduit-0.9.2-am5eywgjadrfdslkbm2iiukrgony25jx;/home/axom/axom_tpls/clang-14.0.0/parmetis-4.0.3-totaqsyyaqqne76f3h3utf6he5hnfj3i;/home/axom/axom_tpls/clang-14.0.0/metis-5.1.0-vstqxoisaqzmauseelggw2ipkjxpxyb2;/home/axom/axom_tpls/clang-14.0.0/hdf5-1.8.23-pd77dfbbqmoujqh64homnougp5stx4mr;/home/axom/axom_tpls/clang-14.0.0/caliper-2.10.0-oirvdfkyevzclrrtc4d4fkoiccw7oshp;/home/axom/axom_tpls/clang-14.0.0/libunwind-1.6.2-yovgajxilzs4khvufv73arjcgya5tr25;/home/axom/axom_tpls/clang-14.0.0/elfutils-0.191-jzxk7dbbigew6uulryjbu3p3zmjobpa7;/home/axom/axom_tpls/clang-14.0.0/zstd-1.5.6-jdvede5e5ftsojui6ghblyl7u2znbnu3;/home/axom/axom_tpls/clang-14.0.0/zlib-ng-2.2.1-oevfc4jn574mzjvfakgsrsso5g7vc3uj;/home/axom/axom_tpls/clang-14.0.0/xz-5.4.6-zovyngtilewkrzialvu453oy3usgahmu;/home/axom/axom_tpls/clang-14.0.0/pkgconf-2.2.0-fs63yvwfbbvxaxmqdhh5jhtn6ch6slbg;/home/axom/axom_tpls/clang-14.0.0/libiconv-1.17-ejpqqyvgaa3bcjowgoxdtknuwbtja3bz;/home/axom/axom_tpls/clang-14.0.0/blt-0.6.2-i23yaxmyycvounaz4wfduk5vvaurliye;/home/axom/axom_tpls/clang-14.0.0/adiak-0.4.0-axvlay3g64yralqxz6tet3dg2ilxsd2z" CACHE STRING "")
+set(CMAKE_PREFIX_PATH "/home/axom/axom_tpls/clang-14.0.0/umpire-2024.07.0-x3qc35tst2zhry545rgvowwbgomgc2ql;/home/axom/axom_tpls/clang-14.0.0/fmt-11.0.2-zxzr5ejl2icv2wkxrmytysohcwa56dym;/home/axom/axom_tpls/clang-14.0.0/raja-2024.07.0-wvpmv7ubnzad5frbffxkco37c4zwdh66;/home/axom/axom_tpls/clang-14.0.0/camp-2024.07.0-drhul62p64d42qwqnc6sbazwxudcgtzo;/home/axom/axom_tpls/clang-14.0.0/mfem-4.6.0-4khgoizhebqald4wsjiriiep2nsuqrj2;/home/axom/axom_tpls/clang-14.0.0/hypre-2.24.0-gmgla43c3i2sasbyvrzvvynfheah5dki;/home/axom/axom_tpls/clang-14.0.0/gmake-4.4.1-z6rav4bbtoxhlimk3lo3zuhcobg2p5l6;/home/axom/axom_tpls/clang-14.0.0/conduit-0.9.2-am5eywgjadrfdslkbm2iiukrgony25jx;/home/axom/axom_tpls/clang-14.0.0/parmetis-4.0.3-totaqsyyaqqne76f3h3utf6he5hnfj3i;/home/axom/axom_tpls/clang-14.0.0/metis-5.1.0-vstqxoisaqzmauseelggw2ipkjxpxyb2;/home/axom/axom_tpls/clang-14.0.0/hdf5-1.8.23-pd77dfbbqmoujqh64homnougp5stx4mr;/home/axom/axom_tpls/clang-14.0.0/caliper-2.10.0-oirvdfkyevzclrrtc4d4fkoiccw7oshp;/home/axom/axom_tpls/clang-14.0.0/libunwind-1.6.2-yovgajxilzs4khvufv73arjcgya5tr25;/home/axom/axom_tpls/clang-14.0.0/elfutils-0.191-jzxk7dbbigew6uulryjbu3p3zmjobpa7;/home/axom/axom_tpls/clang-14.0.0/zstd-1.5.6-jdvede5e5ftsojui6ghblyl7u2znbnu3;/home/axom/axom_tpls/clang-14.0.0/zlib-ng-2.2.1-oevfc4jn574mzjvfakgsrsso5g7vc3uj;/home/axom/axom_tpls/clang-14.0.0/xz-5.4.6-zovyngtilewkrzialvu453oy3usgahmu;/home/axom/axom_tpls/clang-14.0.0/pkgconf-2.2.0-fs63yvwfbbvxaxmqdhh5jhtn6ch6slbg;/home/axom/axom_tpls/clang-14.0.0/libiconv-1.17-ejpqqyvgaa3bcjowgoxdtknuwbtja3bz;/home/axom/axom_tpls/clang-14.0.0/blt-0.6.2-i23yaxmyycvounaz4wfduk5vvaurliye;/home/axom/axom_tpls/clang-14.0.0/adiak-0.4.0-axvlay3g64yralqxz6tet3dg2ilxsd2z" CACHE STRING "")
 
 set(CMAKE_INSTALL_RPATH_USE_LINK_PATH "ON" CACHE STRING "")
 
-set(CMAKE_BUILD_RPATH "/home/axom/axom_tpls/clang-14.0.0/axom-develop-77bsfofkeh2hi2ff7fstp2qsg2fzimak/lib;/home/axom/axom_tpls/clang-14.0.0/axom-develop-77bsfofkeh2hi2ff7fstp2qsg2fzimak/lib64;/home/axom/axom_tpls/clang-14.0.0/adiak-0.4.0-axvlay3g64yralqxz6tet3dg2ilxsd2z/lib;/home/axom/axom_tpls/clang-14.0.0/caliper-2.10.0-oirvdfkyevzclrrtc4d4fkoiccw7oshp/lib;/home/axom/axom_tpls/clang-14.0.0/elfutils-0.191-jzxk7dbbigew6uulryjbu3p3zmjobpa7/lib;/home/axom/axom_tpls/clang-14.0.0/libiconv-1.17-ejpqqyvgaa3bcjowgoxdtknuwbtja3bz/lib;/home/axom/axom_tpls/clang-14.0.0/pkgconf-2.2.0-fs63yvwfbbvxaxmqdhh5jhtn6ch6slbg/lib;/home/axom/axom_tpls/clang-14.0.0/xz-5.4.6-zovyngtilewkrzialvu453oy3usgahmu/lib;/home/axom/axom_tpls/clang-14.0.0/zlib-ng-2.2.1-oevfc4jn574mzjvfakgsrsso5g7vc3uj/lib;/home/axom/axom_tpls/clang-14.0.0/zstd-1.5.6-jdvede5e5ftsojui6ghblyl7u2znbnu3/lib;/home/axom/axom_tpls/clang-14.0.0/libunwind-1.6.2-yovgajxilzs4khvufv73arjcgya5tr25/lib;/home/axom/axom_tpls/clang-14.0.0/conduit-0.9.2-am5eywgjadrfdslkbm2iiukrgony25jx/lib;/home/axom/axom_tpls/clang-14.0.0/hdf5-1.8.23-pd77dfbbqmoujqh64homnougp5stx4mr/lib;/home/axom/axom_tpls/clang-14.0.0/metis-5.1.0-vstqxoisaqzmauseelggw2ipkjxpxyb2/lib;/home/axom/axom_tpls/clang-14.0.0/parmetis-4.0.3-totaqsyyaqqne76f3h3utf6he5hnfj3i/lib;/home/axom/axom_tpls/clang-14.0.0/mfem-4.6.0-4khgoizhebqald4wsjiriiep2nsuqrj2/lib;/home/axom/axom_tpls/clang-14.0.0/hypre-2.24.0-gmgla43c3i2sasbyvrzvvynfheah5dki/lib;/home/axom/axom_tpls/clang-14.0.0/raja-2024.07.0-wvpmv7ubnzad5frbffxkco37c4zwdh66/lib;/home/axom/axom_tpls/clang-14.0.0/camp-2024.07.0-drhul62p64d42qwqnc6sbazwxudcgtzo/lib;/home/axom/axom_tpls/clang-14.0.0/umpire-2024.07.0-sm47io5l4xfgy3enimczrmiijsw4pdol/lib;/home/axom/axom_tpls/clang-14.0.0/fmt-11.0.2-zxzr5ejl2icv2wkxrmytysohcwa56dym/lib" CACHE STRING "")
+set(CMAKE_BUILD_RPATH "/home/axom/axom_tpls/clang-14.0.0/axom-develop-emwf5bt2abor2soesihp7f66mf2lhw4z/lib;/home/axom/axom_tpls/clang-14.0.0/axom-develop-emwf5bt2abor2soesihp7f66mf2lhw4z/lib64;/home/axom/axom_tpls/clang-14.0.0/adiak-0.4.0-axvlay3g64yralqxz6tet3dg2ilxsd2z/lib;/home/axom/axom_tpls/clang-14.0.0/caliper-2.10.0-oirvdfkyevzclrrtc4d4fkoiccw7oshp/lib;/home/axom/axom_tpls/clang-14.0.0/elfutils-0.191-jzxk7dbbigew6uulryjbu3p3zmjobpa7/lib;/home/axom/axom_tpls/clang-14.0.0/libiconv-1.17-ejpqqyvgaa3bcjowgoxdtknuwbtja3bz/lib;/home/axom/axom_tpls/clang-14.0.0/pkgconf-2.2.0-fs63yvwfbbvxaxmqdhh5jhtn6ch6slbg/lib;/home/axom/axom_tpls/clang-14.0.0/xz-5.4.6-zovyngtilewkrzialvu453oy3usgahmu/lib;/home/axom/axom_tpls/clang-14.0.0/zlib-ng-2.2.1-oevfc4jn574mzjvfakgsrsso5g7vc3uj/lib;/home/axom/axom_tpls/clang-14.0.0/zstd-1.5.6-jdvede5e5ftsojui6ghblyl7u2znbnu3/lib;/home/axom/axom_tpls/clang-14.0.0/libunwind-1.6.2-yovgajxilzs4khvufv73arjcgya5tr25/lib;/home/axom/axom_tpls/clang-14.0.0/conduit-0.9.2-am5eywgjadrfdslkbm2iiukrgony25jx/lib;/home/axom/axom_tpls/clang-14.0.0/hdf5-1.8.23-pd77dfbbqmoujqh64homnougp5stx4mr/lib;/home/axom/axom_tpls/clang-14.0.0/metis-5.1.0-vstqxoisaqzmauseelggw2ipkjxpxyb2/lib;/home/axom/axom_tpls/clang-14.0.0/parmetis-4.0.3-totaqsyyaqqne76f3h3utf6he5hnfj3i/lib;/home/axom/axom_tpls/clang-14.0.0/mfem-4.6.0-4khgoizhebqald4wsjiriiep2nsuqrj2/lib;/home/axom/axom_tpls/clang-14.0.0/hypre-2.24.0-gmgla43c3i2sasbyvrzvvynfheah5dki/lib;/home/axom/axom_tpls/clang-14.0.0/raja-2024.07.0-wvpmv7ubnzad5frbffxkco37c4zwdh66/lib;/home/axom/axom_tpls/clang-14.0.0/camp-2024.07.0-drhul62p64d42qwqnc6sbazwxudcgtzo/lib;/home/axom/axom_tpls/clang-14.0.0/umpire-2024.07.0-x3qc35tst2zhry545rgvowwbgomgc2ql/lib;/home/axom/axom_tpls/clang-14.0.0/fmt-11.0.2-zxzr5ejl2icv2wkxrmytysohcwa56dym/lib" CACHE STRING "")
 
-set(CMAKE_INSTALL_RPATH "/home/axom/axom_tpls/clang-14.0.0/axom-develop-77bsfofkeh2hi2ff7fstp2qsg2fzimak/lib;/home/axom/axom_tpls/clang-14.0.0/axom-develop-77bsfofkeh2hi2ff7fstp2qsg2fzimak/lib64;/home/axom/axom_tpls/clang-14.0.0/adiak-0.4.0-axvlay3g64yralqxz6tet3dg2ilxsd2z/lib;/home/axom/axom_tpls/clang-14.0.0/caliper-2.10.0-oirvdfkyevzclrrtc4d4fkoiccw7oshp/lib;/home/axom/axom_tpls/clang-14.0.0/elfutils-0.191-jzxk7dbbigew6uulryjbu3p3zmjobpa7/lib;/home/axom/axom_tpls/clang-14.0.0/libiconv-1.17-ejpqqyvgaa3bcjowgoxdtknuwbtja3bz/lib;/home/axom/axom_tpls/clang-14.0.0/pkgconf-2.2.0-fs63yvwfbbvxaxmqdhh5jhtn6ch6slbg/lib;/home/axom/axom_tpls/clang-14.0.0/xz-5.4.6-zovyngtilewkrzialvu453oy3usgahmu/lib;/home/axom/axom_tpls/clang-14.0.0/zlib-ng-2.2.1-oevfc4jn574mzjvfakgsrsso5g7vc3uj/lib;/home/axom/axom_tpls/clang-14.0.0/zstd-1.5.6-jdvede5e5ftsojui6ghblyl7u2znbnu3/lib;/home/axom/axom_tpls/clang-14.0.0/libunwind-1.6.2-yovgajxilzs4khvufv73arjcgya5tr25/lib;/home/axom/axom_tpls/clang-14.0.0/conduit-0.9.2-am5eywgjadrfdslkbm2iiukrgony25jx/lib;/home/axom/axom_tpls/clang-14.0.0/hdf5-1.8.23-pd77dfbbqmoujqh64homnougp5stx4mr/lib;/home/axom/axom_tpls/clang-14.0.0/metis-5.1.0-vstqxoisaqzmauseelggw2ipkjxpxyb2/lib;/home/axom/axom_tpls/clang-14.0.0/parmetis-4.0.3-totaqsyyaqqne76f3h3utf6he5hnfj3i/lib;/home/axom/axom_tpls/clang-14.0.0/mfem-4.6.0-4khgoizhebqald4wsjiriiep2nsuqrj2/lib;/home/axom/axom_tpls/clang-14.0.0/hypre-2.24.0-gmgla43c3i2sasbyvrzvvynfheah5dki/lib;/home/axom/axom_tpls/clang-14.0.0/raja-2024.07.0-wvpmv7ubnzad5frbffxkco37c4zwdh66/lib;/home/axom/axom_tpls/clang-14.0.0/camp-2024.07.0-drhul62p64d42qwqnc6sbazwxudcgtzo/lib;/home/axom/axom_tpls/clang-14.0.0/umpire-2024.07.0-sm47io5l4xfgy3enimczrmiijsw4pdol/lib;/home/axom/axom_tpls/clang-14.0.0/fmt-11.0.2-zxzr5ejl2icv2wkxrmytysohcwa56dym/lib" CACHE STRING "")
+set(CMAKE_INSTALL_RPATH "/home/axom/axom_tpls/clang-14.0.0/axom-develop-emwf5bt2abor2soesihp7f66mf2lhw4z/lib;/home/axom/axom_tpls/clang-14.0.0/axom-develop-emwf5bt2abor2soesihp7f66mf2lhw4z/lib64;/home/axom/axom_tpls/clang-14.0.0/adiak-0.4.0-axvlay3g64yralqxz6tet3dg2ilxsd2z/lib;/home/axom/axom_tpls/clang-14.0.0/caliper-2.10.0-oirvdfkyevzclrrtc4d4fkoiccw7oshp/lib;/home/axom/axom_tpls/clang-14.0.0/elfutils-0.191-jzxk7dbbigew6uulryjbu3p3zmjobpa7/lib;/home/axom/axom_tpls/clang-14.0.0/libiconv-1.17-ejpqqyvgaa3bcjowgoxdtknuwbtja3bz/lib;/home/axom/axom_tpls/clang-14.0.0/pkgconf-2.2.0-fs63yvwfbbvxaxmqdhh5jhtn6ch6slbg/lib;/home/axom/axom_tpls/clang-14.0.0/xz-5.4.6-zovyngtilewkrzialvu453oy3usgahmu/lib;/home/axom/axom_tpls/clang-14.0.0/zlib-ng-2.2.1-oevfc4jn574mzjvfakgsrsso5g7vc3uj/lib;/home/axom/axom_tpls/clang-14.0.0/zstd-1.5.6-jdvede5e5ftsojui6ghblyl7u2znbnu3/lib;/home/axom/axom_tpls/clang-14.0.0/libunwind-1.6.2-yovgajxilzs4khvufv73arjcgya5tr25/lib;/home/axom/axom_tpls/clang-14.0.0/conduit-0.9.2-am5eywgjadrfdslkbm2iiukrgony25jx/lib;/home/axom/axom_tpls/clang-14.0.0/hdf5-1.8.23-pd77dfbbqmoujqh64homnougp5stx4mr/lib;/home/axom/axom_tpls/clang-14.0.0/metis-5.1.0-vstqxoisaqzmauseelggw2ipkjxpxyb2/lib;/home/axom/axom_tpls/clang-14.0.0/parmetis-4.0.3-totaqsyyaqqne76f3h3utf6he5hnfj3i/lib;/home/axom/axom_tpls/clang-14.0.0/mfem-4.6.0-4khgoizhebqald4wsjiriiep2nsuqrj2/lib;/home/axom/axom_tpls/clang-14.0.0/hypre-2.24.0-gmgla43c3i2sasbyvrzvvynfheah5dki/lib;/home/axom/axom_tpls/clang-14.0.0/raja-2024.07.0-wvpmv7ubnzad5frbffxkco37c4zwdh66/lib;/home/axom/axom_tpls/clang-14.0.0/camp-2024.07.0-drhul62p64d42qwqnc6sbazwxudcgtzo/lib;/home/axom/axom_tpls/clang-14.0.0/umpire-2024.07.0-x3qc35tst2zhry545rgvowwbgomgc2ql/lib;/home/axom/axom_tpls/clang-14.0.0/fmt-11.0.2-zxzr5ejl2icv2wkxrmytysohcwa56dym/lib" CACHE STRING "")
 
 set(CMAKE_BUILD_TYPE "Release" CACHE STRING "")
 
@@ -91,7 +91,7 @@ set(LUA_DIR "/usr" CACHE PATH "")
 
 set(RAJA_DIR "${TPL_ROOT}/raja-2024.07.0-wvpmv7ubnzad5frbffxkco37c4zwdh66" CACHE PATH "")
 
-set(UMPIRE_DIR "${TPL_ROOT}/umpire-2024.07.0-sm47io5l4xfgy3enimczrmiijsw4pdol" CACHE PATH "")
+set(UMPIRE_DIR "${TPL_ROOT}/umpire-2024.07.0-x3qc35tst2zhry545rgvowwbgomgc2ql" CACHE PATH "")
 
 set(ADIAK_DIR "${TPL_ROOT}/adiak-0.4.0-axvlay3g64yralqxz6tet3dg2ilxsd2z" CACHE PATH "")