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ELVIRA MIR 2D support#1523

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BradWhitlock wants to merge 94 commits intodevelopLLNL/axom:developfrom feature/whitlock/mir_elviraLLNL/axom:feature/whitlock/mir_elviraCopy head branch name to clipboard

Commits

Commits on Dec 13, 2024

• Initial ElviraAlgorithm class.

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Commits on Jan 11, 2025

• Expose Hex-Hex clip function.

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• Allow setting the node we want to use in SelectedZones.

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• Remove some obsolete code.

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• Initial TopologyMapper.

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• Moved file

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• Build fixes

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• Merged from mir_update

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Commits on Jan 13, 2025

• Adding new test. make style.

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Commits on Jan 14, 2025

• Update data dir.

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• CUDA porting

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Commits on Jan 17, 2025

• Added sorting routines for multiple arrays.

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• Corrections

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• Added another method for splitting selected zones based on materials.

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• Reworked Sorting because previous approach did not compile under nvcc.

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Commits on Jan 28, 2025

• Adding to algorithm

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• MakeZoneCenters

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• Merge branch 'feature/whitlock/mir_update' into feature/whitlock/mir_elvira

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Commits on Feb 11, 2025

• Merge branch 'develop' into feature/whitlock/mir_elvira

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Commits on Feb 19, 2025

• Improve MakeZoneCenters and add test.

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• make style

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Commits on Feb 25, 2025

• Some progress

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• specialized code that invokes elvira by dimension.

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• Fix bug in ZoneListBuilder.

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Commits on Feb 26, 2025

• Moved some ELVIRA functions to cpp file. Save more data for debugging. Start basic test program.

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Commits on Feb 27, 2025

• Moved some helper classes into their own files.

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Commits on Feb 28, 2025

• Compute zone centers

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• sort_multiple functions.

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• Clip polygon/plane

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Commits on Mar 1, 2025

• Added reverse_sort_multiple

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• Test reverse_sort_multiple

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• Added more Polygon template arguments for compute_bounding_box so it works with static polygons.

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• Added initial clip polygon vs plane.

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• Initial code to find plane origin in fragments.

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Commits on Mar 4, 2025

• Improve VTK support

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• Improve polygon/plane clipping.

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• Move fill function

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• Started making output mesh.

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Commits on Mar 5, 2025

• ELVIRA improvements

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• Added clamp method to structured indexing classes. I used the method to improve stencils in Elvira algorithm. Code cleanup.

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• make style

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Commits on Mar 6, 2025

• Making ELVIRA output the clean zones too.

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• Moved some I/O to MIRAlgorithm. Enhanced MergeMeshes so it can handle gaps in connectivity arrays. Enhanced ELVIRA so it combines clean and MIR output to single mesh.

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• make style

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• Added some ELVIRA doc.

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• doc fixes

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Commits on Mar 7, 2025

• Moved some elvira code to a header for HIP to work.

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• Removed obsolete cpp file.

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• make style

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Commits on Mar 8, 2025

• Fixed some problems that prevented Polygon with static array to work right on device.

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• Always add the constructors.

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Commits on Mar 10, 2025

• Added make_unibuffer_matset. Changed some as_int to to_int.

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• Starting a test program that does elvira then mapping.

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• Make MIR honor the naming options

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Commits on Mar 11, 2025

• View improvements. Hook up topology mapper in mir_coupling test.

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• Improvements to TopologyMapper.

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• Do not print node. It still might contain device memory.

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• Make sure to use the right Conduit node.

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• Added some more docs about the importance of where to store data in memory.

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• Fixed memory issues in GPU versions.

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• make style

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Commits on Mar 12, 2025

• Add Elvira support to mir_concentric_circles.

  BradWhitlock

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• Add some casting because isNearlyEqual does not accept mixed argument types.

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• Elvira fixes

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• polygon/plane clip fix.

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• make style

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Commits on Mar 13, 2025

• Improve search

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• Moved code to a detail header file.

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Commits on Mar 14, 2025

• Added elvira test for selectedZones. Fixed bug in ElviraAlgorithm related to selectedZones.

  BradWhitlock

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• Added selectedZones support in mir_coupling test. Fixed bugs. Improved TopologyMapper so it compresses out gaps in material ids and vfs.

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• Lower clip tolerance

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• SLIC_ASSERT

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Commits on Mar 15, 2025

• Enhancements for strided-structured mesh support in ElviraAlgorithm. Added BasicIndexing and made it available in other topology views.

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• Turned off some debugging prints

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Commits on Mar 17, 2025

• Fixed some errors in TopologyMapper.

  BradWhitlock

  committed
  2fcb9f2

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• Added more doc

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• Small testing fixes

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• Release notes

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• make style

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  1a4f67b

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• Updated data directory version.

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• Removed an obsolete macro

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Commits on Mar 18, 2025

• Fixed mir_concentric_circles.py script so it measures the right quantities.

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• Small fixes for mir_elvira2d.dpp and update data dir.

  BradWhitlock

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  a70d6c5

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• Moved CLI app declaration in a test. Made some other test main functions more uniform.

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  27e2bf3

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• Fix copy/paste mistake

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  fc404ed

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• Fix exception catch order.

  BradWhitlock

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  a6aec51

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• Merge branch 'develop' into feature/whitlock/mir_elvira

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• parallel mir_concentric_circles

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• make style

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Commits on Mar 19, 2025

• Enhance mir_concentric_circles.py so we can run parallel timings.

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• Merge branch 'feature/whitlock/mir_elvira' of github.com:LLNL/axom into feature/whitlock/mir_elvira

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Commits on Mar 24, 2025

• Resolved conflict. Moved/improved a sorting test.

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• Sort fixes for when IndexType is long.

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• make style

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