add YOGRT_LIBRARIES to SCR_EXTERNAL_SERIAL_LIBS

[Alessandro-Barbieri]

No description provided.

[adammoody]

Thanks, @Alessandro-Barbieri . I think we only call libyogrt from the main SCR library, so in theory we shouldn't have to link to libyogrt in the serial binaries.

Does this PR resolve a link error that you're seeing? Can you forward the error info?

[Alessandro-Barbieri]

[53/78] /usr/bin/x86_64-pc-linux-gnu-gcc  -I/var/tmp/portage/sys-cluster/scr-3.0/work/scr-3.0/src -I/var/tmp/portage/sys-cluster/scr-3.0/work/scr-3.0_build -D_GLIBCXX_ASSERTIONS -Wall -Os -pipe -march=native -fdiagnostics-color=always -frecord-gcc-switches -fexceptions -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -ftree-vectorize -fplugin=annobin -Waddress -Waggressive-loop-optimizations -Warray-bounds -Wclobbered -Wdate-time -Wformat -Wformat-security -Wfree-nonheap-object -Wnonnull -Wparentheses -Wpointer-arith -Wreturn-local-addr -Wsizeof-pointer-memaccess -Wstrict-aliasing -Wuninitialized -Wunused-value -Wvolatile-register-var -Wno-error=implicit-function-declaration -Wimplicit-function-declaration -fPIE -MD -MT src/CMakeFiles/scr_crc32.dir/scr_crc32.c.o -MF src/CMakeFiles/scr_crc32.dir/scr_crc32.c.o.d -o src/CMakeFiles/scr_crc32.dir/scr_crc32.c.o -c /var/tmp/portage/sys-cluster/scr-3.0/work/scr-3.0/src/scr_crc32.c
[54/78] : && /usr/bin/x86_64-pc-linux-gnu-gcc -Wall -Os -pipe -march=native -fdiagnostics-color=always -frecord-gcc-switches -fexceptions -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -ftree-vectorize -fplugin=annobin -Waddress -Waggressive-loop-optimizations -Warray-bounds -Wclobbered -Wdate-time -Wformat -Wformat-security -Wfree-nonheap-object -Wnonnull -Wparentheses -Wpointer-arith -Wreturn-local-addr -Wsizeof-pointer-memaccess -Wstrict-aliasing -Wuninitialized -Wunused-value -Wvolatile-register-var -Wno-error=implicit-function-declaration -Wimplicit-function-declaration -Wl,-O1 -Wl,--as-needed -Wl,--sort-common    -rdynamic src/CMakeFiles/scr_crc32.dir/scr_crc32.c.o -o src/scr_crc32  -Wl,-rpath,/var/tmp/portage/sys-cluster/scr-3.0/work/scr-3.0_build/src  src/libscr_base.so  -laxl  -lredset_base  -lspath_base  -lkvtree_base  -lz  -lpthread && :
FAILED: src/scr_crc32
: && /usr/bin/x86_64-pc-linux-gnu-gcc -Wall -Os -pipe -march=native -fdiagnostics-color=always -frecord-gcc-switches -fexceptions -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -ftree-vectorize -fplugin=annobin -Waddress -Waggressive-loop-optimizations -Warray-bounds -Wclobbered -Wdate-time -Wformat -Wformat-security -Wfree-nonheap-object -Wnonnull -Wparentheses -Wpointer-arith -Wreturn-local-addr -Wsizeof-pointer-memaccess -Wstrict-aliasing -Wuninitialized -Wunused-value -Wvolatile-register-var -Wno-error=implicit-function-declaration -Wimplicit-function-declaration -Wl,-O1 -Wl,--as-needed -Wl,--sort-common    -rdynamic src/CMakeFiles/scr_crc32.dir/scr_crc32.c.o -o src/scr_crc32  -Wl,-rpath,/var/tmp/portage/sys-cluster/scr-3.0/work/scr-3.0_build/src  src/libscr_base.so  -laxl  -lredset_base  -lspath_base  -lkvtree_base  -lz  -lpthread && :
/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.1/../../../../x86_64-pc-linux-gnu/bin/ld: src/libscr_base.so: undefined reference to `yogrt_remaining'
collect2: error: ld returned 1 exit status
ninja: build stopped: subcommand failed.

[adammoody]

Thanks, @Alessandro-Barbieri . That's helpful. For some reason, I don't see the same error in my link. Maybe the linker version or option is the difference.

Rather than add libyogrt to the link, I'm wondering if we can drop the scr_env.c file from the objects in the serial binaries. Does it work if you drop scr_env.c from the noMPI sources here?

scr/src/CMakeLists.txt

Line 24 in d153d58

scr_env.c

[Alessandro-Barbieri]

That's because yogrt_remaining is used in scr_env.c and it will end in scr_base.a (in this case you get no errors because it's static)
but if you try to build scr_base.so as in #454 you'll get that error at link time