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Feature: Update Full RHS Calls #324

Merged
merged 109 commits into from
Nov 8, 2023
Merged

Feature: Update Full RHS Calls #324

merged 109 commits into from
Nov 8, 2023

Commits on Aug 1, 2023

  1. flow chart for ERKStep Full RHS Evals

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  2. Update ERKStep RHS eval logic

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  3. fix unused full rhs mode

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  4. remove unused var

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  5. init interp before checking if full RHS is required, check hin, remov… 

    …e h = 1
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  6. remove ynew and fnew aliases in Hermite interp module

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  7. check fn_current in ARKStep, update FSAL check

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  8. adjust ARKStep stage index if explicit first stage

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  9. free vectors in kepler example

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  10. free helper ops

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  11. update recent changes

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Commits on Aug 2, 2023

  1. update call_fullrhs flag for ARKStep

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  2. Merge branch 'bugfix/memleak-sunmemory' into feature/arkode-fullrhs-2

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  3. Merge branch 'bugfix/memleak-kepler' into feature/arkode-fullrhs-2

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  4. update relaxation to work with full RHS eval changes

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Commits on Aug 3, 2023

  1. add ARKStep test for number of RHS evals

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  2. update ARKStep rhs eval test

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  3. remove extra RHS evaluation with FSAL DIRK methods

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  4. fsal -> stiffly accurate

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Commits on Aug 4, 2023

  1. test all ERK, DIRK, and IMEX methods

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  2. add ERKStep RHS eval test

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Commits on Aug 9, 2023

  1. add M and M(t) to stage test

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  2. fix bug when using explicit method with fixed M

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Commits on Aug 11, 2023

  1. update mass matrix logic in ARKStep fullRHS

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Commits on Aug 12, 2023

  1. update ERK flow chart, start ARK flow chart

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Commits on Aug 13, 2023

  1. update flow charts

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Commits on Aug 14, 2023

  1. update MRIStep full RHS

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Commits on Aug 16, 2023

  1. update some .out files

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  2. Merge branch 'develop' into feature/arkode-fullrhs-2 

    Conflicts:
  doc/sundials_developers/source/testing/CI.rst
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Commits on Aug 19, 2023

  1. move mri forcing in arkstep to sdata and compute solution

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  2. update some ERK, ARK, and MRI output files

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Commits on Aug 20, 2023

  1. allow stepper to set default interpolation module

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Commits on Aug 21, 2023

  1. fix return value

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    gardner48 committed Aug 21, 2023
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  2. remove some logging

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  3. fix initial step size check

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  4. update comments

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  5. do not require full rhs from stepper

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  6. add comment

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  7. update comments

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  8. update ark and erk rhs evals test configs

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  9. remove fullRHS usage in MRIStep TakeStep

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  10. update docs

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  11. remove unused variable

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  12. fix printing explicit MRI coupling tables

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  13. update change log

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  14. update expected MRI RHS evaluation count

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  15. update output files

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  16. ensure fn is allocated with rootfinding

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  17. update SPRK docs

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  18. update output files, rhs eval checks

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Commits on Aug 22, 2023

  1. update f2003 output files

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  2. Fixed dangling reference

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  3. Merge branch 'develop' into feature/arkode-fullrhs-2

    @gardner48
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  4. add README noting documentation build requirements

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  5. fix output files, diff CXX_parallel test outputs

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  6. remove old comment

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  7. add unit_test subdirectories to tarscript

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  8. update CMake for CXX_parallel unit test

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Commits on Aug 23, 2023

  1. Merge branch 'develop' into feature/arkode-fullrhs-2 

    Conflicts:
  CHANGELOG.md
  doc/arkode/guide/source/Introduction.rst
  examples/arkode/CXX_parhyp/ark_heat2D_hypre_pfmg_imex_--np_2_2.out
  examples/arkode/CXX_parhyp/ark_heat2D_hypre_pfmg_mri_--np_2_2.out
  examples/arkode/C_serial/ark_damped_harmonic_symplectic.out
  examples/arkode/C_serial/ark_harmonic_symplectic.out
  examples/arkode/C_serial/ark_kepler.out
  examples/arkode/C_serial/ark_kepler_--stepper_SPRK_--step-mode_fixed_--method_ARKODE_SPRK_EULER_1_1_--tf_50_--check-order_--nout_1.out
  examples/arkode/C_serial/ark_kepler_--stepper_SPRK_--step-mode_fixed_--method_ARKODE_SPRK_LEAPFROG_2_2_--tf_50_--check-order_--nout_1.out
  examples/arkode/C_serial/ark_kepler_--stepper_SPRK_--step-mode_fixed_--method_ARKODE_SPRK_MCLACHLAN_2_2_--tf_50_--check-order_--nout_1.out
  examples/arkode/C_serial/ark_kepler_--stepper_SPRK_--step-mode_fixed_--method_ARKODE_SPRK_MCLACHLAN_3_3_--tf_50_--check-order_--nout_1.out
  examples/arkode/C_serial/ark_kepler_--stepper_SPRK_--step-mode_fixed_--method_ARKODE_SPRK_MCLACHLAN_4_4_--tf_50_--check-order_--nout_1.out
  examples/arkode/C_serial/ark_kepler_--stepper_SPRK_--step-mode_fixed_--method_ARKODE_SPRK_MCLACHLAN_5_6_--tf_50_--check-order_--nout_1.out
  examples/arkode/C_serial/ark_kepler_--stepper_SPRK_--step-mode_fixed_--method_ARKODE_SPRK_PSEUDO_LEAPFROG_2_2_--tf_50_--check-order_--nout_1.out
  examples/arkode/C_serial/ark_kepler_--stepper_SPRK_--step-mode_fixed_--method_ARKODE_SPRK_RUTH_3_3_--tf_50_--check-order_--nout_1.out
  examples/arkode/C_serial/ark_kepler_--stepper_SPRK_--step-mode_fixed_--method_ARKODE_SPRK_YOSHIDA_6_8_--tf_50_--check-order_--nout_1.out
  examples/arkode/C_serial/ark_reaction_diffusion_mri.out
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Commits on Aug 24, 2023

  1. Update output files post merge

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  2. update f2003 output files after merge

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  3. Merge branch 'develop' into feature/arkode-fullrhs-2

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Commits on Sep 20, 2023

  1. Merge branch 'develop' into feature/arkode-fullrhs-2 

    Conflicts:
  scripts/updateVersion.sh
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  2. update MRI full RHS comment

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Commits on Oct 4, 2023

  1. Merge branch 'develop' into feature/arkode-fullrhs-2

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Commits on Oct 5, 2023

  1. update ApplyForcing

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Commits on Oct 6, 2023

  1. fix typos

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  2. update comments

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  3. change fn_current to fn_is_current

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Commits on Oct 9, 2023

  1. add inner stepper test and return error on interpolation failure

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  2. add IsStifflyAccurate Butcher table function

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  3. fix warnings with apple-clang 15.0.0

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Commits on Oct 19, 2023

  1. update max lin iters in diffusion examples

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  2. tighten nonlinear solver tolerance in KPR convergence test

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  3. update output files

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Commits on Oct 20, 2023

  1. relaxation: remove delta y fn, loosen res tol

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  2. update output files

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Commits on Oct 26, 2023

  1. Merge branch 'develop' into feature/arkode-fullrhs-2

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  2. Merge branch 'develop' into feature/arkode-fullrhs-2

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Commits on Oct 27, 2023

  1. Merge branch 'develop' into feature/arkode-fullrhs-2

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Commits on Oct 28, 2023

  1. Merge branch 'develop' into feature/arkode-fullrhs-2

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  2. update example nls tolerances

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  3. update output files

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Commits on Oct 29, 2023

  1. Merge branch 'develop' into feature/arkode-fullrhs-2

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  2. update output files

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Commits on Oct 30, 2023

  1. use y_new = z[s-1] for stiffly accurate methods

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  2. relax LS stat comparisons in MRI vs DIRK test

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  3. update relaxation examples

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  4. update output files

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Commits on Nov 2, 2023

  1. Merge branch 'develop' into feature/arkode-fullrhs-2

    @gardner48
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  2. search for output files in destination path

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  3. update answers commit

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  4. Merge branch 'develop' into feature/arkode-fullrhs-2

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Commits on Nov 3, 2023

  1. Merge branch 'develop' into feature/arkode-fullrhs-2

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  2. update answers commit

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  3. include LastTestsFailed.log in artifacts

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  4. update answers commmit

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Commits on Nov 5, 2023

  1. update to upload-artifact@v3 for multipath support

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  2. cancel existing workflow on new push

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  3. upload full Testing directory

    @gardner48
    gardner48 committed Nov 5, 2023
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  4. add copy option to output update script

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    gardner48 committed Nov 5, 2023
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  5. update answers submodule

    @gardner48
    gardner48 committed Nov 5, 2023
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  6. update stat comparison to use tolerance

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    gardner48 committed Nov 5, 2023
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  7. update answers commit

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    gardner48 committed Nov 5, 2023
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  8. reset answers back to main

    @gardner48
    gardner48 committed Nov 5, 2023
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  9. update answers submodule

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    gardner48 committed Nov 5, 2023
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  10. update answers submodule

    @gardner48
    gardner48 committed Nov 5, 2023
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  11. add workflow_dispatch to other tests

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    gardner48 committed Nov 5, 2023
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Commits on Nov 7, 2023

  1. Merge branch 'develop' into feature/arkode-fullrhs-2

    @balos1
    balos1 authored Nov 7, 2023
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