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Maintenance: Simplify tarscripts #365

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merged 7 commits into from
Nov 6, 2023
Merged

Maintenance: Simplify tarscripts #365

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26123a5
simplify tarscripts
gardner48 Nov 2, 2023
1d2ff51
add pipefail
gardner48 Nov 3, 2023
2af8fac
create benchmarks and cmake dirs
gardner48 Nov 3, 2023
cc41d18
force remove __pycache__
gardner48 Nov 3, 2023
9630e77
remove temporary, ignored, or untracked files
gardner48 Nov 3, 2023
3eacee7
build docs after cleaning tmpdir
gardner48 Nov 5, 2023
5b6d172
Merge branch 'develop' into feature/simplify-tarscripts
balos1 Nov 6, 2023
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354 changes: 6 additions & 348 deletions scripts/arkode
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239 changes: 6 additions & 233 deletions scripts/cvode
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Original file line number Diff line number Diff line change
Expand Up @@ -16,6 +16,7 @@
# ------------------------------------------------------------------------------

set -e
set -o pipefail

tarfile=$1
distrobase=$2
Expand All @@ -34,242 +35,14 @@ fi
$tar $tarfile $distrobase/doc/cvode/guide/Makefile
$tar $tarfile $distrobase/doc/cvode/guide/source

$tar $tarfile $distrobase/include/cvode/cvode.h
$tar $tarfile $distrobase/include/cvode/cvode_bandpre.h
$tar $tarfile $distrobase/include/cvode/cvode_bbdpre.h
$tar $tarfile $distrobase/include/cvode/cvode_diag.h
$tar $tarfile $distrobase/include/cvode/cvode_direct.h
$tar $tarfile $distrobase/include/cvode/cvode_ls.h
$tar $tarfile $distrobase/include/cvode/cvode_proj.h
$tar $tarfile $distrobase/include/cvode/cvode_spils.h
echo " --- Add cvode include files to $tarfile"
$tar $tarfile $distrobase/include/cvode

$tar $tarfile $distrobase/src/cvode/LICENSE
$tar $tarfile $distrobase/src/cvode/NOTICE
$tar $tarfile $distrobase/src/cvode/README.md
$tar $tarfile $distrobase/src/cvode/CMakeLists.txt

$tar $tarfile $distrobase/src/cvode/cvode.c
$tar $tarfile $distrobase/src/cvode/cvode_fused_stubs.c
$tar $tarfile $distrobase/src/cvode/cvode_fused_gpu.cpp
$tar $tarfile $distrobase/src/cvode/cvode_bandpre.c
$tar $tarfile $distrobase/src/cvode/cvode_bandpre_impl.h
$tar $tarfile $distrobase/src/cvode/cvode_bbdpre.c
$tar $tarfile $distrobase/src/cvode/cvode_bbdpre_impl.h
$tar $tarfile $distrobase/src/cvode/cvode_diag.c
$tar $tarfile $distrobase/src/cvode/cvode_diag_impl.h
$tar $tarfile $distrobase/src/cvode/cvode_direct.c
$tar $tarfile $distrobase/src/cvode/cvode_impl.h
$tar $tarfile $distrobase/src/cvode/cvode_io.c
$tar $tarfile $distrobase/src/cvode/cvode_ls.c
$tar $tarfile $distrobase/src/cvode/cvode_ls_impl.h
$tar $tarfile $distrobase/src/cvode/cvode_nls.c
$tar $tarfile $distrobase/src/cvode/cvode_proj.c
$tar $tarfile $distrobase/src/cvode/cvode_proj_impl.h
$tar $tarfile $distrobase/src/cvode/cvode_spils.c

echo " --- Add cvode F2003 interface to $tarfile"

$tar $tarfile $distrobase/src/cvode/fmod/CMakeLists.txt
$tar $tarfile $distrobase/src/cvode/fmod/fcvode_mod.c
$tar $tarfile $distrobase/src/cvode/fmod/fcvode_mod.f90
echo " --- Add cvode source files to $tarfile"
$tar $tarfile $distrobase/src/cvode

echo " --- Add cvode examples to $tarfile"

$tar $tarfile $distrobase/examples/cvode/CMakeLists.txt

$tar $tarfile $distrobase/examples/cvode/serial/README
$tar $tarfile $distrobase/examples/cvode/serial/CMakeLists.txt
$tar $tarfile $distrobase/examples/cvode/serial/cvAdvDiff_bnd.c
$tar $tarfile $distrobase/examples/cvode/serial/cvAdvDiff_bndL.c
$tar $tarfile $distrobase/examples/cvode/serial/cvAdvDiff_bndL.out
$tar $tarfile $distrobase/examples/cvode/serial/cvAdvDiff_bnd.out
$tar $tarfile $distrobase/examples/cvode/serial/cvAnalytic_mels.c
$tar $tarfile $distrobase/examples/cvode/serial/cvAnalytic_mels.out
$tar $tarfile $distrobase/examples/cvode/serial/cvDirectDemo_ls.c
$tar $tarfile $distrobase/examples/cvode/serial/cvDirectDemo_ls.out
$tar $tarfile $distrobase/examples/cvode/serial/cvDisc_dns.c
$tar $tarfile $distrobase/examples/cvode/serial/cvDisc_dns.out
$tar $tarfile $distrobase/examples/cvode/serial/cvDiurnal_kry_bp.c
$tar $tarfile $distrobase/examples/cvode/serial/cvDiurnal_kry_bp.out
$tar $tarfile $distrobase/examples/cvode/serial/cvDiurnal_kry.c
$tar $tarfile $distrobase/examples/cvode/serial/cvDiurnal_kry.out
$tar $tarfile $distrobase/examples/cvode/serial/cvKrylovDemo_ls.c
$tar $tarfile $distrobase/examples/cvode/serial/cvKrylovDemo_ls.out
$tar $tarfile $distrobase/examples/cvode/serial/cvKrylovDemo_ls_1.out
$tar $tarfile $distrobase/examples/cvode/serial/cvKrylovDemo_ls_2.out
$tar $tarfile $distrobase/examples/cvode/serial/cvKrylovDemo_ls_0_1.out
$tar $tarfile $distrobase/examples/cvode/serial/cvKrylovDemo_prec.c
$tar $tarfile $distrobase/examples/cvode/serial/cvKrylovDemo_prec.out
$tar $tarfile $distrobase/examples/cvode/serial/cvParticle_dns.c
$tar $tarfile $distrobase/examples/cvode/serial/cvParticle_dns.out
$tar $tarfile $distrobase/examples/cvode/serial/cvPendulum_dns.c
$tar $tarfile $distrobase/examples/cvode/serial/cvPendulum_dns.out
$tar $tarfile $distrobase/examples/cvode/serial/cvRoberts_dns.c
$tar $tarfile $distrobase/examples/cvode/serial/cvRoberts_dns.out
$tar $tarfile $distrobase/examples/cvode/serial/cvRoberts_dns_stats.csv
$tar $tarfile $distrobase/examples/cvode/serial/cvRoberts_dns_constraints.c
$tar $tarfile $distrobase/examples/cvode/serial/cvRoberts_dns_constraints.out
$tar $tarfile $distrobase/examples/cvode/serial/cvRoberts_dnsL.c
$tar $tarfile $distrobase/examples/cvode/serial/cvRoberts_dnsL.out
$tar $tarfile $distrobase/examples/cvode/serial/cvRoberts_dns_uw.c
$tar $tarfile $distrobase/examples/cvode/serial/cvRoberts_dns_uw.out
$tar $tarfile $distrobase/examples/cvode/serial/cvRoberts_dns_negsol.c
$tar $tarfile $distrobase/examples/cvode/serial/cvRoberts_dns_negsol.out
$tar $tarfile $distrobase/examples/cvode/serial/cvRoberts_klu.c
$tar $tarfile $distrobase/examples/cvode/serial/cvRoberts_klu.out
$tar $tarfile $distrobase/examples/cvode/serial/cvRoberts_block_klu.c
$tar $tarfile $distrobase/examples/cvode/serial/cvRoberts_block_klu.out
$tar $tarfile $distrobase/examples/cvode/serial/cvRoberts_sps.c
$tar $tarfile $distrobase/examples/cvode/serial/cvRoberts_sps.out
$tar $tarfile $distrobase/examples/cvode/serial/cvRocket_dns.c
$tar $tarfile $distrobase/examples/cvode/serial/cvRocket_dns.out
$tar $tarfile $distrobase/examples/cvode/serial/plot_cvParticle.py
$tar $tarfile $distrobase/examples/cvode/serial/plot_cvPendulum.py

$tar $tarfile $distrobase/examples/cvode/F2003_serial/README
$tar $tarfile $distrobase/examples/cvode/F2003_serial/CMakeLists.txt
$tar $tarfile $distrobase/examples/cvode/F2003_serial/cv_analytic_fp_f2003.f90
$tar $tarfile $distrobase/examples/cvode/F2003_serial/cv_analytic_fp_f2003.out
$tar $tarfile $distrobase/examples/cvode/F2003_serial/cv_analytic_sys_dns_f2003.f90
$tar $tarfile $distrobase/examples/cvode/F2003_serial/cv_analytic_sys_dns_f2003.out
$tar $tarfile $distrobase/examples/cvode/F2003_serial/cv_analytic_sys_dns_jac_f2003.f90
$tar $tarfile $distrobase/examples/cvode/F2003_serial/cv_analytic_sys_dns_jac_f2003.out
$tar $tarfile $distrobase/examples/cvode/F2003_serial/cv_analytic_sys_klu_f2003.f90
$tar $tarfile $distrobase/examples/cvode/F2003_serial/cv_analytic_sys_klu_f2003.out
$tar $tarfile $distrobase/examples/cvode/F2003_serial/cv_brusselator_dns_f2003.f90
$tar $tarfile $distrobase/examples/cvode/F2003_serial/cv_brusselator_dns_f2003.out

$tar $tarfile $distrobase/examples/cvode/C_openmp/README
$tar $tarfile $distrobase/examples/cvode/C_openmp/CMakeLists.txt
$tar $tarfile $distrobase/examples/cvode/C_openmp/cvAdvDiff_bnd_omp.c
$tar $tarfile $distrobase/examples/cvode/C_openmp/cvAdvDiff_bnd_omp.out

$tar $tarfile $distrobase/examples/cvode/C_openmpdev/README
$tar $tarfile $distrobase/examples/cvode/C_openmpdev/CMakeLists.txt
$tar $tarfile $distrobase/examples/cvode/C_openmpdev/cvAdvDiff_kry_ompdev.c
$tar $tarfile $distrobase/examples/cvode/C_openmpdev/cvAdvDiff_kry_ompdev.out

$tar $tarfile $distrobase/examples/cvode/parallel/README
$tar $tarfile $distrobase/examples/cvode/parallel/CMakeLists.txt
$tar $tarfile $distrobase/examples/cvode/parallel/cvAdvDiff_non_p.c
$tar $tarfile $distrobase/examples/cvode/parallel/cvAdvDiff_non_p.out
$tar $tarfile $distrobase/examples/cvode/parallel/cvAdvDiff_diag_p.c
$tar $tarfile $distrobase/examples/cvode/parallel/cvAdvDiff_diag_p.out
$tar $tarfile $distrobase/examples/cvode/parallel/cvDiurnal_kry_bbd_p.c
$tar $tarfile $distrobase/examples/cvode/parallel/cvDiurnal_kry_bbd_p.out
$tar $tarfile $distrobase/examples/cvode/parallel/cvDiurnal_kry_p.c
$tar $tarfile $distrobase/examples/cvode/parallel/cvDiurnal_kry_p.out

$tar $tarfile $distrobase/examples/cvode/superludist/README
$tar $tarfile $distrobase/examples/cvode/superludist/CMakeLists.txt
$tar $tarfile $distrobase/examples/cvode/superludist/cvAdvDiff_sludist.cpp
$tar $tarfile $distrobase/examples/cvode/superludist/cvAdvDiff_sludist_32.out
$tar $tarfile $distrobase/examples/cvode/superludist/cvAdvDiff_sludist_64.out

$tar $tarfile $distrobase/examples/cvode/parhyp/README
$tar $tarfile $distrobase/examples/cvode/parhyp/CMakeLists.txt
$tar $tarfile $distrobase/examples/cvode/parhyp/cvAdvDiff_non_ph.c
$tar $tarfile $distrobase/examples/cvode/parhyp/cvAdvDiff_non_ph.out

$tar $tarfile $distrobase/examples/cvode/petsc/README
$tar $tarfile $distrobase/examples/cvode/petsc/CMakeLists.txt
$tar $tarfile $distrobase/examples/cvode/petsc/cv_petsc_ex7.c
$tar $tarfile $distrobase/examples/cvode/petsc/cv_petsc_ex7.out
$tar $tarfile $distrobase/examples/cvode/petsc/cvAdvDiff_petsc.c
$tar $tarfile $distrobase/examples/cvode/petsc/cvAdvDiff_petsc.out

$tar $tarfile $distrobase/examples/cvode/C_mpimanyvector/README
$tar $tarfile $distrobase/examples/cvode/C_mpimanyvector/CMakeLists.txt
$tar $tarfile $distrobase/examples/cvode/C_mpimanyvector/cvDiurnal_kry_mpimanyvec.c
$tar $tarfile $distrobase/examples/cvode/C_mpimanyvector/cvDiurnal_kry_mpimanyvec.out

$tar $tarfile $distrobase/examples/cvode/cuda/README
$tar $tarfile $distrobase/examples/cvode/cuda/CMakeLists.txt
$tar $tarfile $distrobase/examples/cvode/cuda/cvAdvDiff_diag_cuda.cu
$tar $tarfile $distrobase/examples/cvode/cuda/cvAdvDiff_diag_cuda_0_0.out
$tar $tarfile $distrobase/examples/cvode/cuda/cvAdvDiff_diag_cuda_0_1.out
$tar $tarfile $distrobase/examples/cvode/cuda/cvAdvDiff_diag_cuda_1_1.out
$tar $tarfile $distrobase/examples/cvode/cuda/cvAdvDiff_kry_cuda.cu
$tar $tarfile $distrobase/examples/cvode/cuda/cvAdvDiff_kry_cuda.out
$tar $tarfile $distrobase/examples/cvode/cuda/cvAdvDiff_kry_cuda_managed.cu
$tar $tarfile $distrobase/examples/cvode/cuda/cvAdvDiff_kry_cuda_managed.out
$tar $tarfile $distrobase/examples/cvode/cuda/cvRoberts_block_cusolversp_batchqr.cu
$tar $tarfile $distrobase/examples/cvode/cuda/cvRoberts_block_cusolversp_batchqr.out

$tar $tarfile $distrobase/examples/cvode/ginkgo/CMakeLists.txt
$tar $tarfile $distrobase/examples/cvode/ginkgo/cv_heat2D_ginkgo.cpp
$tar $tarfile $distrobase/examples/cvode/ginkgo/cv_heat2D_ginkgo.hpp
$tar $tarfile $distrobase/examples/cvode/ginkgo/cv_heat2D_ginkgo.CUDA.out
$tar $tarfile $distrobase/examples/cvode/ginkgo/cv_heat2D_ginkgo.OMP.out
$tar $tarfile $distrobase/examples/cvode/ginkgo/cv_heat2D_ginkgo.REF.out
$tar $tarfile $distrobase/examples/cvode/ginkgo/cv_kpr_ginkgo.cpp
$tar $tarfile $distrobase/examples/cvode/ginkgo/cv_kpr_ginkgo.hpp
$tar $tarfile $distrobase/examples/cvode/ginkgo/cv_kpr_ginkgo.OMP.out
$tar $tarfile $distrobase/examples/cvode/ginkgo/cv_kpr_ginkgo.REF.out

$tar $tarfile $distrobase/examples/cvode/hip/README
$tar $tarfile $distrobase/examples/cvode/hip/CMakeLists.txt
$tar $tarfile $distrobase/examples/cvode/hip/cvAdvDiff_diag_hip.cpp
$tar $tarfile $distrobase/examples/cvode/hip/cvAdvDiff_diag_hip_0_0.out
$tar $tarfile $distrobase/examples/cvode/hip/cvAdvDiff_diag_hip_0_1.out
$tar $tarfile $distrobase/examples/cvode/hip/cvAdvDiff_diag_hip_1_1.out
$tar $tarfile $distrobase/examples/cvode/hip/cvAdvDiff_kry_hip.cpp
$tar $tarfile $distrobase/examples/cvode/hip/cvAdvDiff_kry_hip.out

$tar $tarfile $distrobase/examples/cvode/kokkos/CMakeLists.txt
$tar $tarfile $distrobase/examples/cvode/kokkos/cv_bruss_batched_kokkos.cpp
$tar $tarfile $distrobase/examples/cvode/kokkos/cv_bruss_batched_kokkos.CUDA.out
$tar $tarfile $distrobase/examples/cvode/kokkos/cv_bruss_batched_kokkos.OPENMP.out
$tar $tarfile $distrobase/examples/cvode/kokkos/cv_bruss_batched_kokkos.SERIAL.out
$tar $tarfile $distrobase/examples/cvode/kokkos/cv_bruss_batched_kokkos_2D.cpp
$tar $tarfile $distrobase/examples/cvode/kokkos/cv_bruss_batched_kokkos_2D.CUDA.out
$tar $tarfile $distrobase/examples/cvode/kokkos/cv_bruss_batched_kokkos_2D.OPENMP.out
$tar $tarfile $distrobase/examples/cvode/kokkos/cv_bruss_batched_kokkos_2D.SERIAL.out

$tar $tarfile $distrobase/examples/cvode/magma/README
$tar $tarfile $distrobase/examples/cvode/magma/CMakeLists.txt
$tar $tarfile $distrobase/examples/cvode/magma/cv_bruss_batched_magma.cpp
$tar $tarfile $distrobase/examples/cvode/magma/cv_bruss_batched_magma.out

$tar $tarfile $distrobase/examples/cvode/raja/README
$tar $tarfile $distrobase/examples/cvode/raja/CMakeLists.txt
$tar $tarfile $distrobase/examples/cvode/raja/cvAdvDiff_kry_raja.cpp
$tar $tarfile $distrobase/examples/cvode/raja/cvAdvDiff_kry_raja.out

$tar $tarfile $distrobase/examples/cvode/CXX_onemkl/CMakeLists.txt
$tar $tarfile $distrobase/examples/cvode/CXX_onemkl/README
$tar $tarfile $distrobase/examples/cvode/CXX_onemkl/cvRoberts_blockdiag_onemkl.cpp
$tar $tarfile $distrobase/examples/cvode/CXX_onemkl/cvRoberts_blockdiag_onemkl.out

$tar $tarfile $distrobase/examples/cvode/CXX_serial/CMakeLists.txt
$tar $tarfile $distrobase/examples/cvode/CXX_serial/README
$tar $tarfile $distrobase/examples/cvode/CXX_serial/cv_heat2D.cpp
$tar $tarfile $distrobase/examples/cvode/CXX_serial/cv_heat2D.hpp
$tar $tarfile $distrobase/examples/cvode/CXX_serial/cv_heat2D.out
$tar $tarfile $distrobase/examples/cvode/CXX_serial/cv_kpr.cpp
$tar $tarfile $distrobase/examples/cvode/CXX_serial/cv_kpr.hpp
$tar $tarfile $distrobase/examples/cvode/CXX_serial/cv_kpr.out
$tar $tarfile $distrobase/examples/cvode/CXX_serial/plot_heat2D.py

$tar $tarfile $distrobase/examples/cvode/CXX_parallel/CMakeLists.txt
$tar $tarfile $distrobase/examples/cvode/CXX_parallel/README
$tar $tarfile $distrobase/examples/cvode/CXX_parallel/cv_heat2D_p.cpp
$tar $tarfile $distrobase/examples/cvode/CXX_parallel/cv_heat2D_p_--np_2_2.out
$tar $tarfile $distrobase/examples/cvode/CXX_parallel/plot_heat2D_p.py

$tar $tarfile $distrobase/examples/cvode/CXX_parhyp/CMakeLists.txt
$tar $tarfile $distrobase/examples/cvode/CXX_parhyp/README
$tar $tarfile $distrobase/examples/cvode/CXX_parhyp/cv_heat2D_hypre_ls.cpp
$tar $tarfile $distrobase/examples/cvode/CXX_parhyp/cv_heat2D_hypre_ls_--np_2_2.out
$tar $tarfile $distrobase/examples/cvode/CXX_parhyp/cv_heat2D_hypre_pfmg.cpp
$tar $tarfile $distrobase/examples/cvode/CXX_parhyp/cv_heat2D_hypre_pfmg_--np_2_2.out
$tar $tarfile $distrobase/examples/cvode/CXX_parhyp/plot_heat2D_p.py

$tar $tarfile $distrobase/examples/cvode/CXX_sycl/CMakeLists.txt
$tar $tarfile $distrobase/examples/cvode/CXX_sycl/README
$tar $tarfile $distrobase/examples/cvode/CXX_sycl/cvAdvDiff_kry_sycl.cpp
$tar $tarfile $distrobase/examples/cvode/CXX_sycl/cvAdvDiff_kry_sycl.out
$tar $tarfile $distrobase/examples/cvode

echo " --- Add cvode unit tests to $tarfile"

$tar $tarfile $distrobase/test/unit_tests/cvode
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