rebuild notebooks #32
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| # This notebook will rebuild Python notebooks to html files (with cell outputs) | |
| name: rebuild notebooks | |
| on: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: '50 16 1 * *' | |
| jobs: | |
| notebook_update: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.9' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install wheel numpy # For somoclu | |
| pip install . | |
| pip install git+https://github.com/LSSTDESC/rail_bpz@lynn/rail-directory-match | |
| pip install flake8 pytest pytest-cov mockmpi pytest-timeout | |
| pip install -r docs/requirements.txt | |
| pip install -r docs/nbconvert-requirements.txt | |
| pip install jupyter nbconvert nbformat | |
| - name: Update core notebooks | |
| if: always() | |
| run: | | |
| jupyter nbconvert --to html --execute examples/core_examples/FileIO_DataStore.ipynb --output ../../docs/source/notebooks-core/FileIO_DataStore.html | |
| jupyter nbconvert --to html --execute examples/core_examples/hyperbolic_magnitude_test.ipynb --output ../../docs/source/notebooks-core/hyperbolic_magnitude_test.html | |
| jupyter nbconvert --to html --execute examples/core_examples/iterator_test.ipynb --output ../../docs/source/notebooks-core/iterator_test.html | |
| jupyter nbconvert --to html --execute examples/core_examples/Run_Pipe.ipynb --output ../../docs/source/notebooks-core/Run_Pipe.html | |
| jupyter nbconvert --to html --execute examples/core_examples/Pipe_Example.ipynb --output ../../docs/source/notebooks-core/Pipe_Example.html | |
| - name: Update creation notebooks | |
| if: always() | |
| run: | | |
| jupyter nbconvert --to html --execute examples/creation_examples/posterior-demo.ipynb --output ../../docs/source/notebooks-creation/posterior-demo.html | |
| jupyter nbconvert --to html --execute examples/creation_examples/degradation-demo.ipynb --output ../../docs/source/notebooks-creation/degradation-demo.html | |
| jupyter nbconvert --to html --execute examples/creation_examples/example_GridSelection_for_HSC.ipynb --output ../../docs/source/notebooks-creation/example_GridSelection_for_HSC.html | |
| jupyter nbconvert --to html --execute examples/creation_examples/example_SpecSelection_for_zCOSMOS.ipynb --output ../../docs/source/notebooks-creation/example_SpecSelection_for_zCOSMOS.html | |
| - name: Update estimation notebooks | |
| if: always() | |
| run: | | |
| jupyter nbconvert --to html --execute examples/estimation_examples/NZDir.ipynb --output ../../docs/source/notebooks-estimation/NZDir.html | |
| jupyter nbconvert --to html --execute examples/estimation_examples/test_sampled_summarizers.ipynb --output ../../docs/source/notebooks-estimation/test_sampled_summarizers.html | |
| - name: Update goldenspike | |
| if: always() | |
| run: | | |
| jupyter nbconvert --to html --execute examples/goldenspike_examples/goldenspike.ipynb --output ../../docs/source/notebooks-other/goldenspike.html | |
| - name: Create pull request | |
| uses: peter-evans/create-pull-request@v4 | |
| with: | |
| branch: auto-notebooks | |
| title: "Auto-rebuild notebooks" | |
| body: "Automatically rebuilt Python notebooks in this repo." | |
| commit-message: "[Auto-rebuild notebooks]" | |
| add-paths: | | |
| *.html | |
| reviewers: OliviaLynn | |
| - name: Report failure | |
| if: ${{ failure() }} | |
| uses: dawidd6/action-send-mail@v3 | |
| with: | |
| server_address: smtp.gmail.com | |
| server_port: 465 | |
| username: ${{ secrets.EMAIL_USERNAME }} | |
| password: ${{ secrets.EMAIL_PASSWORD }} | |
| subject: ${{ github.repository }}'s ${{ github.job }} -> ${{ job.status }} | |
| body: | | |
| A GitHub Actions failure has been encountered. | |
| Repo: ${{ github.repository }} | |
| Workflow: ${{ github.workflow }} | |
| Job: ${{ github.job }} | |
| Status: ${{ job.status }} | |
| to: [email protected] | |
| from: Github (LSST/RAIL) |