The chromosome names don't always start with "chr" #392

Job	Run time
quick-tests (sanity)	2m 25s
quick-tests (dry-run)	2m 9s
quick-tests (utilities)	2m 1s
quick-tests (report)	2m 15s
quick-tests (scripts)	1m 59s
quick-tests (docs)	2m 7s
functional-tests (qc-seq)	7m 34s
functional-tests (snv-indels)	15m 22s
functional-tests (itd)	9m 38s
functional-tests (fusion)	9m 58s
functional-tests (expression)	7m 42s
functional-tests (test-hamlet-targetted-RNA)	18m 12s
functional-tests (test-hamlet-chrM)	21m 15s
	1h 42m 37s

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