Update blacklist and hotspots

LUMC · Dec 18, 2024 · 5d4a7f1 · 5d4a7f1
1 parent 5771894
commit 5d4a7f1
Show file tree

Hide file tree

Showing 2 changed files with 52 additions and 18 deletions.
diff --git a/utilities/deps/small-files/blacklist.txt b/utilities/deps/small-files/blacklist.txt
@@ -26,3 +26,28 @@ ENST00000380013.9:c.4317dup
 ENST00000380013.9:c.5838_5839insA
 ENST00000380013.9:c.5843_5844dup
 ENST00000380013.9:c.5844dup
+ENST00000335508.11:c.642dup
+ENST00000429544.7:c.985dup
+ENST00000335508.11:c.2445dup
+ENST00000264033.6:c.815dup
+ENST00000429544.7:c.844dup
+ENST00000429544.7:c.939dup
+ENST00000305921.8:c.1535dup
+ENST00000381652.4:c.1370dup
+ENST00000305921.8:c.1008dup
+ENST00000371145.8:c.363dup
+ENST00000371145.8:c.135dup
+ENST00000291552.9:c.246dup
+ENST00000378444.9:c.472dup
+ENST00000371145.8:c.101dup
+ENST00000371145.8:c.1400dup
+ENST00000649279.2:c.640dup
+ENST00000429544.7:c.1627dup
+ENST00000305921.8:c.1534_1535dup
+ENST00000649279.2:c.1261dup
+ENST00000649279.2:c.440dup
+ENST00000380013.9:c.679G>A
+ENST00000371145.8:c.3222dup
+ENST00000649279.2:c.434G>A
+ENST00000320356.7:c.2187dup
+ENST00000378444.9:c.3621dup
diff --git a/utilities/deps/small-files/hotspots_genome.bed b/utilities/deps/small-files/hotspots_genome.bed
@@ -1,18 +1,27 @@
-chr1	114716121	114716127	NRAS
-chr1	114713906	114713909	NRAS
-chr2	208248386	208248389	IDH1
-chr2	25234371	25234374	DNMT3A
-chr4	54723597	54723609	KIT
-chr4	54733153	54733156	KIT
-chr5	171410541	171410544	NPM1
-chr13	28018499	28018505	FLT3
-chr20	32434431	32437338	ASXL1
-chr21	34859474	34886965	RUNX1
-chr4	105237251	105272824	TET2
-chr4	105276036	105276519	TET2
-chr11	32391972	32392062	WT1
-chr11	32396257	32396407	WT1
-chr15	90088604	90088607	IDH2
-chr15	90088700	90088703	IDH2
-chr19	33301337	33301601	CEBPA
-chr17	7674218	7674221	TP53
+chr20	32434431	32437338
+chr19	33301337	33301601
+chr2	25234371	25234374
+chr7	148829734	148832717
+chr7	148819595	148827240
+chr7	148813958	148815545
+chr7	148807648	148811720
+chr13	28018499	28018505
+chr2	208248386	208248389
+chr15	90088700	90088703
+chr15	90088604	90088607
+chr4	54723597	54723609
+chr4	54733153	54733156
+chr5	171410541	171410544
+chr1	114716121	114716127
+chr1	114713906	114713909
+chr21	34859474	34886965
+chr2	197401741	197403035
+chr17	76736875	76736878
+chrX	124045346	124045349
+chr4	105237251	105272824
+chr4	105276036	105276519
+chr17	7674218	7674221
+chr21	43104344	43104347
+chr21	43094665	43094668
+chr11	32396257	32396407
+chr11	32391972	32392062