Update tabel index

LUMC · Dec 3, 2024 · 7a1bc6d · 7a1bc6d
1 parent 0fc8b1c
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Showing 4 changed files with 9 additions and 10 deletions.
diff --git a/report/templates/contents_aln.html.j2 b/report/templates/contents_aln.html.j2
@@ -1,9 +1,10 @@
+
 <h1>Alignment Statistics</h1>
 
 {% set stats = modules.snv_indels.stats %}
 
 <div class="table-title">
-  <p>Table 4 | Alignment count statistics</p>
+  <p>Table 3 | Alignment count statistics</p>
 </div>
 <table class="table-wide" style="margin-bottom: 2em;">
   <thead>
@@ -49,7 +50,7 @@
 </table>
 
 <div class="table-title">
-  <p>Table 5 | Insert size statistics</p>
+  <p>Table 4 | Insert size statistics</p>
 </div>
 <table class="table-long" style="margin-bottom: 2em;">
   <tbody>
@@ -70,6 +71,4 @@
       <td>{{ stats.ins.min_insert_size|show_int }}</td>
     </tr>
   </tbody>
-</table>
-
-
+</table>
diff --git a/report/templates/contents_overview.html.j2 b/report/templates/contents_overview.html.j2
@@ -2,7 +2,7 @@
 
 <div class="keep-together">
   <div class="table-title">
-    <p>Table 7 | High-impact variants in genes of interest</p>
+    <p>Table 6 | High-impact variants in genes of interest</p>
   </div>
   <table class="table-wide" id="var-overview" style="margin-bottom: 2em;">
     <thead>
@@ -46,7 +46,7 @@
 
 <div class="keep-together">
   <div class="table-title">
-    <p>Table 8 | Detected fusion genes</p>
+    <p>Table 7 | Detected fusion genes</p>
   </div>
   <table class="table-wide" id="fusion-overview" style="margin-bottom: 2em;">
     <thead>
@@ -78,7 +78,7 @@
 
 <div class="keep-together">
   <div class="table-title">
-    <p>Table 9 | Detected reciprocal soft clip events</p>
+    <p>Table 8 | Detected reciprocal soft clip events</p>
   </div>
   <table class="table-wide" style="margin-bottom: 2em; width: 30%;">
     <thead>

diff --git a/report/templates/contents_rna.html.j2 b/report/templates/contents_rna.html.j2
@@ -3,7 +3,7 @@
 {% set stats = modules.snv_indels.stats %}
 
 <div class="table-title">
-  <p>Table 6 | Base-level annotation statistics</p>
+  <p>Table 5 | Base-level annotation statistics</p>
 </div>
 <table class="table-wide" style="margin-bottom: 2em;">
   <thead>

diff --git a/report/templates/contents_var.html.j2 b/report/templates/contents_var.html.j2
@@ -3,7 +3,7 @@
 
 <h1>Variant Calling Results</h1>
 
-{% set vars = {'figure_idx': 1, 'table_idx': 10} %}
+{% set vars = {'figure_idx': 1, 'table_idx': 9} %}
 {% for gene in stats.cov %}
   {% for tid, exons in stats.cov[gene].items() %}
   <div class="keep-together">