v0.5.0
Full Changelog: v0.4.0...v0.5.0
- breaking change: creating primers command moved into
primers create
from justprimers
- add:
primers score
sub-command to score primers (#4):
$ primers score --json GGTCTCAATGAGACAATAGCACACAC GAAGACTTTCGTATGCTGACCTAG | jq
[
{
"seq": "GGTCTCAATGAGACAATAGCACACAC",
"len": 26,
"tm": 67,
"tm_total": 67,
"gc": 0.5,
"dg": -1.86,
"fwd": true,
"off_target_count": 0,
"scoring": {
"penalty": 13.23,
"penalty_tm": 5,
"penalty_tm_diff": 2.5,
"penalty_gc": 0,
"penalty_len": 2,
"penalty_dg": 3.73,
"penalty_off_target": 0
}
},
{
"seq": "GAAGACTTTCGTATGCTGACCTAG",
"len": 24,
"tm": 64.5,
"tm_total": 64.5,
"gc": 0.5,
"dg": 0,
"fwd": false,
"off_target_count": 0,
"scoring": {
"penalty": 6,
"penalty_tm": 2.5,
"penalty_tm_diff": 2.5,
"penalty_gc": 0,
"penalty_len": 1,
"penalty_dg": 0,
"penalty_off_target": 0
}
}
]