singularity #309
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| name: singularity | |
| on: | |
| push: | |
| branches: | |
| - main | |
| schedule: | |
| - cron: '0 0 * * *' | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| ref: ${{ github.ref }} | |
| - uses: eWaterCycle/setup-singularity@v7 | |
| with: | |
| singularity-version: 3.8.3 | |
| - name: build singularity container | |
| env: | |
| SINGULARITYENV_GH_TOKEN: ${{ github.token }} | |
| run: | | |
| singularity build --sandbox --fakeroot bounce.sif singularity_container | |
| if [ $? -ne 0 ]; then | |
| echo "Singularity build failed." | |
| exit 1 | |
| fi | |
| # run pytest in the container | |
| singularity exec --fakeroot bounce.sif bash -c "PATH='/bs/poetry/bin:$PATH' cd /bs/bounce && PATH='/bs/poetry/bin:$PATH' poetry run python3 -m pytest -v" |