Attempt to resolve a NOTE about missing definition for 'assays<-' and…

… similar
LieberInstitute · Nov 21, 2024 · b670aed · b670aed
1 parent b041199
commit b670aed
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Showing 4 changed files with 11 additions and 6 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -39,7 +39,6 @@ Suggests:
     rmarkdown,
     sessioninfo,
     Seurat,
-    SingleCellExperiment,
     testthat (>= 3.0.0)
 Config/testthat/edition: 3
 VignetteBuilder: knitr
@@ -56,6 +55,7 @@ Imports:
     readr,
     rjson,
     S4Vectors,
+    SingleCellExperiment,
     spatialLIBD (>= 1.17.8),
     stringr,
     SummarizedExperiment,

diff --git a/NAMESPACE b/NAMESPACE
@@ -17,6 +17,9 @@ importFrom(BiocBaseUtils,checkInstalled)
 importFrom(BiocGenerics,cbind)
 importFrom(Matrix,Matrix)
 importFrom(S4Vectors,DataFrame)
+importFrom(SingleCellExperiment,"reducedDims<-")
+importFrom(SingleCellExperiment,reducedDims)
+importFrom(SummarizedExperiment,"assays<-")
 importFrom(SummarizedExperiment,assays)
 importFrom(SummarizedExperiment,colData)
 importFrom(SummarizedExperiment,rowData)

diff --git a/R/merge_overlapping.R b/R/merge_overlapping.R
@@ -20,6 +20,8 @@
 #' @importFrom tibble rownames_to_column
 #' @importFrom Matrix Matrix
 #' @importFrom BiocGenerics cbind
+#' @importFrom SummarizedExperiment assays<-
+#' @importFrom SingleCellExperiment reducedDims reducedDims<-
 #' @export
 #' @author Nicholas J. Eagles
 #'

diff --git a/man/merge_overlapping.Rd b/man/merge_overlapping.Rd