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Helper functions for new segmentation domain #2105

Merged
merged 75 commits into from
Nov 30, 2023
Merged

Helper functions for new segmentation domain #2105

merged 75 commits into from
Nov 30, 2023

Commits on Aug 12, 2023

  1. requirements

    @SkafteNicki
    SkafteNicki committed Aug 12, 2023
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  2. add implementations

    @SkafteNicki
    SkafteNicki committed Aug 12, 2023
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  3. add test

    @SkafteNicki
    SkafteNicki committed Aug 12, 2023
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  4. fix doctests

    @SkafteNicki
    SkafteNicki committed Aug 12, 2023
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  5. add table

    @SkafteNicki
    SkafteNicki committed Aug 12, 2023
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  6. add second table

    @SkafteNicki
    SkafteNicki committed Aug 12, 2023
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  7. add tests

    @SkafteNicki
    SkafteNicki committed Aug 12, 2023
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Commits on Aug 15, 2023

  1. more efficient distance alg

    @SkafteNicki
    SkafteNicki committed Aug 15, 2023
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Commits on Aug 17, 2023

  1. working surface distance

    @SkafteNicki
    SkafteNicki committed Aug 17, 2023
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  2. working mask edges function

    @SkafteNicki
    SkafteNicki committed Aug 17, 2023
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  3. working crop arg

    @SkafteNicki
    SkafteNicki committed Aug 17, 2023
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Commits on Sep 19, 2023

  1. Merge branch 'master' into segmentation/helper

    @SkafteNicki
    SkafteNicki committed Sep 19, 2023
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  2. rename helper to utils

    @SkafteNicki
    SkafteNicki committed Sep 19, 2023
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  3. small update

    @SkafteNicki
    SkafteNicki committed Sep 19, 2023
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Commits on Sep 23, 2023

  1. add note on memory

    @SkafteNicki
    SkafteNicki committed Sep 23, 2023
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  2. Merge branch 'master' into segmentation/helper

    @SkafteNicki
    SkafteNicki authored Sep 23, 2023
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  3. changelog

    @SkafteNicki
    SkafteNicki committed Sep 23, 2023
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  4. view to unsqueeze

    @SkafteNicki
    SkafteNicki committed Sep 23, 2023
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Commits on Sep 24, 2023

  1. Merge branch 'master' into segmentation/helper

    @SkafteNicki
    SkafteNicki authored Sep 24, 2023
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  2. fix

    @SkafteNicki
    SkafteNicki committed Sep 24, 2023
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  3. fix mypy

    @SkafteNicki
    SkafteNicki committed Sep 24, 2023
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Commits on Sep 25, 2023

  1. add requirement

    @SkafteNicki
    SkafteNicki committed Sep 25, 2023
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  2. fix unittests

    @SkafteNicki
    SkafteNicki committed Sep 25, 2023
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  3. add cuda testing

    @SkafteNicki
    SkafteNicki committed Sep 25, 2023
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Commits on Sep 26, 2023

  1. fix compatibility with old pytorch

    @SkafteNicki
    SkafteNicki committed Sep 26, 2023
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  2. Merge branch 'master' into segmentation/helper

    @SkafteNicki
    SkafteNicki authored Sep 26, 2023
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  3. improve performance

    @SkafteNicki
    SkafteNicki committed Sep 26, 2023
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  4. Merge branch 'segmentation/helper' of https://github.com/PyTorchLight… 

    …ning/metrics into segmentation/helper
    @SkafteNicki
    SkafteNicki committed Sep 26, 2023
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  5. fix spelling

    @SkafteNicki
    SkafteNicki committed Sep 26, 2023
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Commits on Sep 28, 2023

  1. Merge branch 'master' into segmentation/helper

    @SkafteNicki
    SkafteNicki authored Sep 28, 2023
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Commits on Oct 5, 2023

  1. Merge branch 'master' into segmentation/helper

    @SkafteNicki
    SkafteNicki authored Oct 5, 2023
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Commits on Oct 9, 2023

  1. Merge branch 'master' into segmentation/helper

    @SkafteNicki
    SkafteNicki authored Oct 9, 2023
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  2. Merge branch 'master' into segmentation/helper

    @Borda
    Borda authored Oct 9, 2023
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Commits on Oct 11, 2023

  1. Merge branch 'master' into segmentation/helper

    @Borda
    Borda committed Oct 11, 2023
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Commits on Oct 17, 2023

  1. Merge branch 'master' into segmentation/helper

    @Borda
    Borda authored Oct 17, 2023
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  2. Merge branch 'master' into segmentation/helper

    @SkafteNicki
    SkafteNicki authored Oct 17, 2023
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  3. fix

    @SkafteNicki
    SkafteNicki committed Oct 17, 2023
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  4. fix monai to 1.3.0

    @SkafteNicki
    SkafteNicki committed Oct 17, 2023
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Commits on Oct 20, 2023

  1. Merge branch 'master' into segmentation/helper

    @Borda
    Borda authored Oct 20, 2023
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Commits on Nov 8, 2023

  1. Merge branch 'master' into segmentation/helper

    @Borda
    Borda authored Nov 8, 2023
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Commits on Nov 18, 2023

  1. Merge branch 'master' into segmentation/helper

    @matsumotosan
    matsumotosan authored Nov 18, 2023
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  2. Merge branch 'master' into segmentation/helper

    @mergify
    mergify[bot] authored Nov 18, 2023
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  3. Merge branch 'master' into segmentation/helper

    @mergify
    mergify[bot] authored Nov 18, 2023
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Commits on Nov 21, 2023

  1. Merge branch 'master' into segmentation/helper

    @mergify
    mergify[bot] authored Nov 21, 2023
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  2. Merge branch 'master' into segmentation/helper

    @mergify
    mergify[bot] authored Nov 21, 2023
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  3. Merge branch 'master' into segmentation/helper

    @mergify
    mergify[bot] authored Nov 21, 2023
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  4. Merge branch 'master' into segmentation/helper

    @mergify
    mergify[bot] authored Nov 21, 2023
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Commits on Nov 23, 2023

  1. Merge branch 'master' into segmentation/helper

    @mergify
    mergify[bot] authored Nov 23, 2023
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  2. Merge branch 'master' into segmentation/helper

    @mergify
    mergify[bot] authored Nov 23, 2023
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  3. Merge branch 'master' into segmentation/helper

    @mergify
    mergify[bot] authored Nov 23, 2023
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Commits on Nov 24, 2023

  1. Merge branch 'master' into segmentation/helper

    @mergify
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  2. Merge branch 'master' into segmentation/helper

    @mergify
    mergify[bot] authored Nov 24, 2023
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  3. Merge branch 'master' into segmentation/helper

    @mergify
    mergify[bot] authored Nov 24, 2023
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Commits on Nov 25, 2023

  1. Merge branch 'master' into segmentation/helper

    @mergify
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  2. Merge branch 'master' into segmentation/helper

    @mergify
    mergify[bot] authored Nov 25, 2023
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  3. Merge branch 'master' into segmentation/helper

    @mergify
    mergify[bot] authored Nov 25, 2023
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  4. Merge branch 'master' into segmentation/helper

    @mergify
    mergify[bot] authored Nov 25, 2023
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  5. Merge branch 'master' into segmentation/helper

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Commits on Nov 27, 2023

  1. Merge branch 'master' into segmentation/helper

    @mergify
    mergify[bot] authored Nov 27, 2023
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Commits on Nov 28, 2023

  1. Merge branch 'master' into segmentation/helper

    @mergify
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  2. Merge branch 'master' into segmentation/helper

    @mergify
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  3. Merge branch 'master' into segmentation/helper

    @mergify
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  4. Merge branch 'master' into segmentation/helper

    @mergify
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  5. Merge branch 'master' into segmentation/helper

    @mergify
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  6. Apply suggestions from code review 

    Co-authored-by: Jirka Borovec <[email protected]>
    @SkafteNicki @Borda
    SkafteNicki and Borda authored Nov 28, 2023
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  7. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Nov 28, 2023
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  8. missing import

    @SkafteNicki
    SkafteNicki committed Nov 28, 2023
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  9. Merge branch 'segmentation/helper' of https://github.com/Lightning-AI… 

    …/torchmetrics into segmentation/helper
    @SkafteNicki
    SkafteNicki committed Nov 28, 2023
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  10. Merge branch 'master' into segmentation/helper

    @mergify
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  11. Merge branch 'master' into segmentation/helper

    @mergify
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  12. Merge branch 'master' into segmentation/helper

    @mergify
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  13. Merge branch 'master' into segmentation/helper

    @mergify
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  14. Merge branch 'master' into segmentation/helper

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Commits on Nov 29, 2023

  1. fix broken test

    @SkafteNicki
    SkafteNicki committed Nov 29, 2023
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  2. Merge branch 'master' into segmentation/helper

    @mergify
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