PA14_GENRE_update

Scripts and data for an updated GENRE of P. aeruginosa UCBPP-PA14

Contents:

LJD_Functions.py: A running script of functions that can be imported for use in other scripts
Potential changes: A running spreadsheet of potential changes to the model. Includes work from two summer students in the lab
PA14 Pseudomonas model: Recently published model that will be built upon
PA01 Pseudomonas model: Recently published model that will be built upon

Name		Name	Last commit message	Last commit date
Latest commit History 8 Commits
.ipynb_checkpoints		.ipynb_checkpoints
__pycache__		__pycache__
mass_imbalance_code_Jake		mass_imbalance_code_Jake
170801_reconEssentiality_falsePositiveAnalysis_common.xlsx		170801_reconEssentiality_falsePositiveAnalysis_common.xlsx
Carbon_Source_Only_Pseudomonas_Proposed_Changes_Taylor_Lewis.xlsx		Carbon_Source_Only_Pseudomonas_Proposed_Changes_Taylor_Lewis.xlsx
Jake_proposed_changes_to_imbalanced_rxns.csv		Jake_proposed_changes_to_imbalanced_rxns.csv
Jake_reactions_with_issues.csv		Jake_reactions_with_issues.csv
LJD_Functions.ipynb		LJD_Functions.ipynb
LJD_Functions.py		LJD_Functions.py
Model_Updates_11_13_18.ipynb		Model_Updates_11_13_18.ipynb
PA14recon1_v25_newMetaboliteIDs.xlsx		PA14recon1_v25_newMetaboliteIDs.xlsx
README.md		README.md
curation-notes_AlineMetris.xlsx		curation-notes_AlineMetris.xlsx
evaluateModel.ipynb		evaluateModel.ipynb
iPAE1146.xml		iPAE1146.xml
iPAU1129.xml		iPAU1129.xml
implementation_PAO1.ipynb		implementation_PAO1.ipynb

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