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demo_spafhy_stand.py
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# -*- coding: utf-8 -*-
"""
Created on Tue Oct 02 14:47:14 2018
@author: slauniai
DEMONSTRATES HOW TO RUN SPAFHY FOR A SINGLE CATCHMENT AND SAVE RESULTS TO NCF.
Use data from C3 (Porkkavaara), a small catchment in Eastern Finland
DEMONSTRATES SPAFHY SETUP, RUNNING, PICKLING AND APPENDING TO NCF.
After model run, use make_figs_C3.py to reproduce Figs. 6-10 in the manuscript
"""
import sys
sys.path.append(r'C:\\SpaFHy_v1_Pallas') # path to folder where SpaFHy is
import os
import numpy as np
import pickle
#import matplotlib.pyplot as plt
#from netCDF4 import Dataset #, date2num, num2date
#from datetime import datetime
# import spafhy components
import spafhy_stand as spafhy
from spafhy_parameters import soil_properties, parameters, topsoil
from spafhy_io import read_catchment_data, read_FMI_weather, read_SVE_runoff
eps = np.finfo(float).eps
""" set up SpaFHy for the catchment """
# load parameter dictionaries
pgen, pcpy, pbu, ptop = parameters()
psoil = soil_properties()
# read gis data and create necessary inputs for model initialization
gisdata = read_catchment_data(pgen['catchment_id'], fpath=pgen['gis_folder'],
plotgrids=True, plotdistr=False)
# if shrub and grass not available
#gisdata['LAI_grass'] = 0.5 * gisdata['LAI_decid']
#gisdata['LAI_shrub'] = 0.1 * gisdata['LAI_conif']
# initialize SpaFHy
spa, ncf, ncf_file = spafhy.initialize(pgen, pcpy, pbu, ptop, psoil, topsoil, gisdata,
ncf=True,
cpy_outputs=False,
bu_outputs=False,
top_outputs=False)
## create netCDF output file
#dlat, dlon = np.shape(spa.GisData['cmask'])
#
#resultsfile = os.path.join(spa.pgen['results_folder'], spa.pgen['ncf_file'])
#spa.ncf_file = resultsfile
#
#ncf, ncf_file = spafhy.initialize_netCDF(ID=spa.id, fname=resultsfile, lat0=spa.GisData['lat0'],
# lon0=spa.GisData['lon0'], dlat=dlat, dlon=dlon, dtime=None)
# read forcing data
FORC = read_FMI_weather(pgen['catchment_id'],
pgen['start_date'],
pgen['end_date'],
sourcefile=pgen['forcing_file'])
FORC['Prec'] = FORC['Prec'] / spa.dt # mms-1
Nsteps = len(FORC)
Nspin = np.where(FORC.index == pgen['spinup_end'])[0][0]
# read catchment runoff data
Qmeas = read_SVE_runoff(pgen['catchment_id'],
pgen['start_date'],
pgen['end_date'],
sourcefile=pgen['runoff_file'])
"""
run SpaFHy spinup
"""
print('*** Running spinup ***')
for k in range(0, Nspin):
#print('step: ' + str(k))
forc= FORC[['doy', 'Rg', 'RH', 'Par', 'T', 'Prec', 'VPD', 'CO2','U']].iloc[k]
spa.run_timestep(forc, ncf=False)
# dump into pickle, clear local and reload: this is a way to save model object
# and start later from same state.
#
#print('--- pickling spa, deleting local spa ---')
#pickle.dump(spa, open('spa_state.pk', 'wb'))
#del spa
#ncf.close()
print('--done ---')
""""
run spafhy and save results into ncf: note that data in ncf file now starts
from index Nspin +1; the first ones are Nan's
"""
# load instance from pickle
#
#print('--- unpickling spa ---')
#spa = pickle.load(open('spa_state.pk', 'rb'))
## open ncf file to append new results
#ncf = Dataset(ncf_file, 'a')
print('*** Running SpaFHy ***')
for k in range(Nspin+1, Nsteps):
print('step: ' + str(k))
forc= FORC[['doy', 'Rg', 'RH', 'Par', 'T', 'Prec', 'VPD', 'CO2','U']].iloc[k]
spa.run_timestep(forc, ncf=ncf)
# close output file
ncf.close()
# pickle spa object for making figures later
with open(os.path.join(spa.pgen['results_folder'], 'C3model.pk'), 'wb') as f:
run = (spa, Qmeas, FORC)
pickle.dump(run, f)
print('*** Done: results in file ' + pgen['ncf_file'] + ' ***')