Directly read from S3 via s3fs (#74) #34

	name: Unit Tests

	on:
	workflow_dispatch:
	push:
	branches:
	- main
	pull_request:
	types:
	- edited
	- opened
	- reopened
	- synchronize

	concurrency:
	group: ${{ github.workflow }}-${{ github.ref }}
	cancel-in-progress: ${{ github.ref != 'refs/heads/main' }}

	defaults:
	run:
	# See https://github.com/marketplace/actions/setup-micromamba#about-login-shells
	shell: bash -leo pipefail {0}

	jobs:
	test:
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false

	steps:
	- name: Checkout source files
	uses: actions/checkout@v4

	- name: Setup micromamba and install/cache dependencies
	env:
	# Prevent timeouts with micromamba (libmamba) during dependency installation
	MAMBA_NO_LOW_SPEED_LIMIT: 1
	uses: mamba-org/setup-micromamba@v1
	with:
	cache-environment: true
	create-args: --category main dev
	environment-file: conda-lock.yml
	environment-name: gedi_subset
	micromamba-version: latest

	- name: Install GEDI Subsetter
	run: python -m pip install --no-deps -e .

	- name: Run unit tests
	run: \|
	make test

	- name: Run type checks
	if: always()
	run: \|
	make typecheck

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