Add guide for reviewers #292
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: GH Actions CI | |
on: | |
pull_request: | |
branches: | |
- main | |
# concurrency: | |
# Commits to develop/master will cancel each other, but PRs will only cancel | |
# commits within the same PR | |
# group: "${{ github.ref }}-${{ github.head_ref }}-${{ github.workflow }}" | |
# cancel-in-progress: true | |
defaults: | |
run: | |
shell: bash -l {0} | |
jobs: | |
gen_matrix: | |
runs-on: ubuntu-22.04 | |
outputs: | |
matrix: ${{ steps.get-changed-mdakits.outputs.matrix }} | |
steps: | |
- uses: actions/checkout@v3 | |
- id: get-python | |
uses: actions/setup-python@v3 | |
with: | |
python-version: 3.9 | |
- id: files | |
name: get changed filed | |
uses: masesgroup/retrieve-changed-files@v3 | |
with: | |
format: 'json' | |
- id: get-changed-mdakits | |
name: build mdakit matrix | |
run: | | |
echo ${{ steps.files.outputs.all }} | |
mdakit=$(python utils/get_affected_mdakits.py --json '${{ steps.files.outputs.all }}') | |
echo ${mdakit} | |
echo "matrix=${mdakit}" >> $GITHUB_OUTPUT | |
mdakit-ci: | |
needs: gen_matrix | |
runs-on: ubuntu-22.04 | |
strategy: | |
fail-fast: false | |
matrix: | |
mdakit: ${{fromJSON(needs.gen_matrix.outputs.matrix)}} | |
jobstep: ['latest', 'develop'] | |
steps: | |
- uses: actions/checkout@v3 | |
- id: prev-python-ver | |
name: prev-python-ver | |
uses: MDAnalysis/get-latest-python-version@main | |
with: | |
last-n-minor-release: 1 | |
- id: get-base-python-deps | |
name: get-base-python-deps | |
run: | | |
pip install requests setuptools packaging pyyaml pydantic PyGithub | |
- id: check-set-python-bounds | |
name: check-set-python-bounds | |
continue-on-error: false | |
run: | | |
basepy=${{steps.prev-python-ver.outputs.python-version}} | |
pyver=$(python utils/check_python_ver.py --mdakit "${{matrix.mdakit}}" --maxpyver ${basepy}) | |
echo "PYVER=${pyver}" >> $GITHUB_ENV | |
- id: install-conda-env | |
name: install-conda-env | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
python-version: ${{ env.PYVER }} | |
add-pip-as-python-dependency: true | |
architecture: x64 | |
use-mamba: true | |
miniforge-variant: Mambaforge | |
channels: conda-forge, defaults | |
channel-priority: flexible | |
auto-update-conda: true | |
show-channel-urls: true | |
- id: install-conda-base-deps | |
name: install-conda-base-deps | |
run: | | |
mamba install requests setuptools packaging pyyaml pydantic | |
pip install PyGithub | |
- id: install-mdakit | |
name: install-mdakit | |
continue-on-error: false | |
run: | | |
if [[ ${{ matrix.jobstep }} == "develop" ]]; then | |
type="src" | |
else | |
type="install" | |
fi | |
install=$(python utils/get_install.py --itype ${type} --mdakit ${{matrix.mdakit}}) | |
echo "install=${install}" | |
eval ${install} | |
- id: install-test-deps | |
name: install-test-deps | |
continue-on-error: false | |
run: | | |
install=$(python utils/get_testdeps.py --mdakit ${{matrix.mdakit}}) | |
echo "install tests:${install}" | |
eval ${install} | |
- id: install-mdanalysis | |
name: install-mdanalysis | |
uses: MDAnalysis/install-mdanalysis@main | |
continue-on-error: false | |
with: | |
version: ${{ matrix.jobstep }} | |
install-tests: true | |
installer: mamba | |
shell: bash -l {0} | |
- id: run-tests | |
name: run-tests | |
continue-on-error: false | |
run: | | |
tests=$(python utils/get_runtests.py --mdakit ${{matrix.mdakit}} --runtype ${{matrix.jobstep}}) | |
echo "tests: ${tests}" | |
eval ${tests} |