Update CI to set minimum python version properly #303
Workflow file for this run
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| name: GH Actions CI | ||
| on: | ||
| pull_request: | ||
| branches: | ||
| - main | ||
| # concurrency: | ||
| # Commits to develop/master will cancel each other, but PRs will only cancel | ||
| # commits within the same PR | ||
| # group: "${{ github.ref }}-${{ github.head_ref }}-${{ github.workflow }}" | ||
| # cancel-in-progress: true | ||
| defaults: | ||
| run: | ||
| shell: bash -l {0} | ||
| jobs: | ||
| gen_matrix: | ||
| runs-on: ubuntu-22.04 | ||
| outputs: | ||
| matrix: ${{ steps.get-changed-mdakits.outputs.matrix }} | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - id: get-python | ||
| uses: actions/setup-python@v4 | ||
| with: | ||
| python-version: 3.9 | ||
| - id: files | ||
| name: get changed filed | ||
| uses: masesgroup/retrieve-changed-files@v3 | ||
| with: | ||
| format: 'json' | ||
| - id: get-changed-mdakits | ||
| name: build mdakit matrix | ||
| run: | | ||
| echo ${{ steps.files.outputs.all }} | ||
| mdakit=$(python utils/get_affected_mdakits.py --json '${{ steps.files.outputs.all }}') | ||
| echo ${mdakit} | ||
| echo "matrix=${mdakit}" >> $GITHUB_OUTPUT | ||
| env_config: | ||
| runs-on: ubuntu-latest | ||
| outputs: | ||
| python-stable: {{ "${{ steps.get-compatible-python.outputs.stable-python }}" }} | ||
|
Check failure on line 46 in .github/workflows/gh-ci.yaml
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||
| python-min: {{ "${{ steps.get-compatible-python.outputs.oldest-pythons }}" }} | ||
| steps: | ||
| - uses: actions/setup-python@v4 | ||
| with: | ||
| python-version: "3.12" | ||
| - id: get-compatible-python | ||
| uses: MDAnalysis/mdanalysis-compatible-python@main | ||
| with: | ||
| release: "develop" | ||
| mdakit-ci: | ||
| needs: [gen_matrix, env_config] | ||
| runs-on: ubuntu-22.04 | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| mdakit: ${{fromJSON(needs.gen_matrix.outputs.matrix)}} | ||
| jobstep: ['latest', 'develop'] | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - id: get-base-python-deps | ||
| name: get-base-python-deps | ||
| run: | | ||
| pip install requests setuptools packaging pyyaml pydantic PyGithub | ||
| - id: check-set-python-bounds | ||
| name: check-set-python-bounds | ||
| continue-on-error: false | ||
| run: | | ||
| maxpy=${{needs.env_config.outputs.python-stable}} | ||
| minpy=${{needs.env_config.outputs.python-min}} | ||
| pyver=$(python utils/check_python_ver.py --mdakit "${{matrix.mdakit}}" --maxpyver ${maxpy} --minpyver ${minpy}) | ||
| echo "PYVER=${pyver}" >> $GITHUB_ENV | ||
| - id: install-conda-env | ||
| name: install-conda-env | ||
| uses: conda-incubator/setup-miniconda@v2 | ||
| with: | ||
| python-version: ${{ env.PYVER }} | ||
| add-pip-as-python-dependency: true | ||
| architecture: x64 | ||
| use-mamba: true | ||
| miniforge-variant: Mambaforge | ||
| channels: conda-forge, defaults | ||
| channel-priority: flexible | ||
| auto-update-conda: true | ||
| show-channel-urls: true | ||
| - id: install-conda-base-deps | ||
| name: install-conda-base-deps | ||
| run: | | ||
| mamba install requests setuptools packaging pyyaml pydantic | ||
| pip install PyGithub | ||
| - id: install-mdakit | ||
| name: install-mdakit | ||
| continue-on-error: false | ||
| run: | | ||
| if [[ ${{ matrix.jobstep }} == "develop" ]]; then | ||
| type="src" | ||
| else | ||
| type="install" | ||
| fi | ||
| install=$(python utils/get_install.py --itype ${type} --mdakit ${{matrix.mdakit}}) | ||
| echo "install=${install}" | ||
| eval ${install} | ||
| - id: install-test-deps | ||
| name: install-test-deps | ||
| continue-on-error: false | ||
| run: | | ||
| install=$(python utils/get_testdeps.py --mdakit ${{matrix.mdakit}}) | ||
| echo "install tests:${install}" | ||
| eval ${install} | ||
| - id: install-mdanalysis | ||
| name: install-mdanalysis | ||
| uses: MDAnalysis/install-mdanalysis@main | ||
| continue-on-error: false | ||
| with: | ||
| version: ${{ matrix.jobstep }} | ||
| install-tests: true | ||
| installer: mamba | ||
| shell: bash -l {0} | ||
| - id: run-tests | ||
| name: run-tests | ||
| continue-on-error: false | ||
| run: | | ||
| tests=$(python utils/get_runtests.py --mdakit ${{matrix.mdakit}} --runtype ${{matrix.jobstep}}) | ||
| echo "tests: ${tests}" | ||
| eval ${tests} | ||
