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MDAnalysis · Jan 3, 2025 · 088360d · 088360d
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diff --git a/2.9.0-dev0/_downloads/899668c9e2e17d4c2fc64131d19cdebc/auxiliary-1.pdf b/2.9.0-dev0/_downloads/899668c9e2e17d4c2fc64131d19cdebc/auxiliary-1.pdf
diff --git a/2.9.0-dev0/advanced_topology.html b/2.9.0-dev0/advanced_topology.html
@@ -254,7 +254,7 @@
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2019-2024, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
+    <p>&#169; Copyright 2019-2025, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
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diff --git a/2.9.0-dev0/atomgroup.html b/2.9.0-dev0/atomgroup.html
@@ -524,7 +524,7 @@ <h2>Methods<a class="headerlink" href="#methods" title="Link to this heading">
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2019-2024, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
+    <p>&#169; Copyright 2019-2025, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
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diff --git a/2.9.0-dev0/contributing.html b/2.9.0-dev0/contributing.html
@@ -278,7 +278,7 @@ <h3>Getting started with Git<a class="headerlink" href="#getting-started-with-gi
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2019-2024, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
+    <p>&#169; Copyright 2019-2025, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
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diff --git a/2.9.0-dev0/contributing_code.html b/2.9.0-dev0/contributing_code.html
@@ -1105,7 +1105,7 @@ <h3>Viewing the documentation interactively<a class="headerlink" href="#viewing-
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2019-2024, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
+    <p>&#169; Copyright 2019-2025, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
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diff --git a/2.9.0-dev0/contributing_docs.html b/2.9.0-dev0/contributing_docs.html
@@ -545,7 +545,7 @@ <h3>Advanced preview with gh-pages<a class="headerlink" href="#advanced-preview-
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2019-2024, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
+    <p>&#169; Copyright 2019-2025, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
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diff --git a/2.9.0-dev0/datasets.html b/2.9.0-dev0/datasets.html
@@ -256,7 +256,7 @@
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   <div role="contentinfo">
-    <p>&#169; Copyright 2019-2024, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
+    <p>&#169; Copyright 2019-2025, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
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diff --git a/2.9.0-dev0/examples/README.html b/2.9.0-dev0/examples/README.html
@@ -288,7 +288,7 @@ <h1>Examples<a class="headerlink" href="#examples" title="Link to this heading">
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2019-2024, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
+    <p>&#169; Copyright 2019-2025, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
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diff --git a/2.9.0-dev0/examples/analysis/README.html b/2.9.0-dev0/examples/analysis/README.html
@@ -406,7 +406,7 @@ <h1>Polymers and membranes<a class="headerlink" href="#polymers-and-membranes" t
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   <div role="contentinfo">
-    <p>&#169; Copyright 2019-2024, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
+    <p>&#169; Copyright 2019-2025, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
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diff --git a/2.9.0-dev0/examples/analysis/alignment_and_rms/README.html b/2.9.0-dev0/examples/analysis/alignment_and_rms/README.html
@@ -252,7 +252,7 @@
   <hr/>
 
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-    <p>&#169; Copyright 2019-2024, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
+    <p>&#169; Copyright 2019-2025, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
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diff --git a/2.9.0-dev0/examples/analysis/alignment_and_rms/aligning_structure_to_another.html b/2.9.0-dev0/examples/analysis/alignment_and_rms/aligning_structure_to_another.html
@@ -465,7 +465,7 @@ <h2>References<a class="headerlink" href="#References" title="Link to this headi
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2019-2024, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
+    <p>&#169; Copyright 2019-2025, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
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diff --git a/2.9.0-dev0/examples/analysis/alignment_and_rms/aligning_trajectory.html b/2.9.0-dev0/examples/analysis/alignment_and_rms/aligning_trajectory.html
@@ -538,7 +538,7 @@ <h2>References<a class="headerlink" href="#References" title="Link to this headi
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2019-2024, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
+    <p>&#169; Copyright 2019-2025, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
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diff --git a/2.9.0-dev0/examples/analysis/alignment_and_rms/aligning_trajectory_to_frame.html b/2.9.0-dev0/examples/analysis/alignment_and_rms/aligning_trajectory_to_frame.html
@@ -430,7 +430,7 @@ <h2>References<a class="headerlink" href="#References" title="Link to this headi
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2019-2024, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
+    <p>&#169; Copyright 2019-2025, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
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diff --git a/2.9.0-dev0/examples/analysis/alignment_and_rms/pairwise_rmsd.html b/2.9.0-dev0/examples/analysis/alignment_and_rms/pairwise_rmsd.html
@@ -439,7 +439,7 @@ <h2>References<a class="headerlink" href="#References" title="Link to this headi
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2019-2024, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
+    <p>&#169; Copyright 2019-2025, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
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diff --git a/2.9.0-dev0/examples/analysis/alignment_and_rms/rmsd.html b/2.9.0-dev0/examples/analysis/alignment_and_rms/rmsd.html
@@ -798,7 +798,7 @@ <h2>References<a class="headerlink" href="#References" title="Link to this headi
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2019-2024, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
+    <p>&#169; Copyright 2019-2025, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
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diff --git a/2.9.0-dev0/examples/analysis/alignment_and_rms/rmsf.html b/2.9.0-dev0/examples/analysis/alignment_and_rms/rmsf.html
@@ -487,7 +487,7 @@ <h2>References<a class="headerlink" href="#References" title="Link to this headi
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2019-2024, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
+    <p>&#169; Copyright 2019-2025, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
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diff --git a/2.9.0-dev0/examples/analysis/custom_parallel_analysis.html b/2.9.0-dev0/examples/analysis/custom_parallel_analysis.html
@@ -945,7 +945,7 @@ <h2>References<a class="headerlink" href="#References" title="Link to this headi
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2019-2024, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
+    <p>&#169; Copyright 2019-2025, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
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diff --git a/2.9.0-dev0/examples/analysis/custom_trajectory_analysis.html b/2.9.0-dev0/examples/analysis/custom_trajectory_analysis.html
@@ -1089,7 +1089,7 @@ <h2>References<a class="headerlink" href="#References" title="Link to this headi
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2019-2024, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
+    <p>&#169; Copyright 2019-2025, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
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diff --git a/2.9.0-dev0/examples/analysis/distances_and_contacts/README.html b/2.9.0-dev0/examples/analysis/distances_and_contacts/README.html
@@ -246,7 +246,7 @@ <h1>Distances and contacts<a class="headerlink" href="#distances-and-contacts" t
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   <div role="contentinfo">
-    <p>&#169; Copyright 2019-2024, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
+    <p>&#169; Copyright 2019-2025, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
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diff --git a/2.9.0-dev0/examples/analysis/distances_and_contacts/contacts_custom.html b/2.9.0-dev0/examples/analysis/distances_and_contacts/contacts_custom.html
@@ -457,7 +457,7 @@ <h2>References<a class="headerlink" href="#References" title="Link to this headi
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2019-2024, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
+    <p>&#169; Copyright 2019-2025, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
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diff --git a/2.9.0-dev0/examples/analysis/distances_and_contacts/contacts_native_fraction.html b/2.9.0-dev0/examples/analysis/distances_and_contacts/contacts_native_fraction.html
@@ -759,7 +759,7 @@ <h2>References<a class="headerlink" href="#References" title="Link to this headi
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2019-2024, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
+    <p>&#169; Copyright 2019-2025, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
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diff --git a/2.9.0-dev0/examples/analysis/distances_and_contacts/contacts_q1q2.html b/2.9.0-dev0/examples/analysis/distances_and_contacts/contacts_q1q2.html
@@ -463,7 +463,7 @@ <h2>References<a class="headerlink" href="#References" title="Link to this headi
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2019-2024, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
+    <p>&#169; Copyright 2019-2025, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
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diff --git a/2.9.0-dev0/examples/analysis/distances_and_contacts/contacts_within_cutoff.html b/2.9.0-dev0/examples/analysis/distances_and_contacts/contacts_within_cutoff.html
@@ -459,7 +459,7 @@ <h2>References<a class="headerlink" href="#References" title="Link to this headi
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-    <p>&#169; Copyright 2019-2024, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
+    <p>&#169; Copyright 2019-2025, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
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-    <p>&#169; Copyright 2019-2024, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
+    <p>&#169; Copyright 2019-2025, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
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-        <p>&#169; Copyright 2019-2024, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
+        <p>&#169; Copyright 2019-2025, Lily Wang, Irfan Alibay, Patricio Barletta, Cédric Bouysset, Rubén Chaves, Jan Domanski, Bjarne Feddersen, Mike Henry, Florent Langenfeld, Hugo MacDermott-Opeskin, Micaela Matta, Rocco Meli, Mahfuza Humayra Mohona, Paul Smith, Mieczyslaw Torchala, Mark Verma, Yuxuan Zhuang, Richard J. Gowers, and Oliver Beckstein..</p>
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