deploy: 6ff8bd4

_sources/content/00_Download_Data.ipynb

@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "c46e559f",
+   "id": "829afc64",
    "metadata": {},
    "source": [
     "# Download Data\n",
@@ -40,7 +40,7 @@
   {
    "cell_type": "code",
    "execution_count": 1,
-   "id": "da7a44bd",
+   "id": "7920c6c9",
    "metadata": {},
    "outputs": [
     {
@@ -63,111 +63,151 @@
      "text": [
       "Downloading...\n",
       "From (original): https://drive.google.com/uc?id=1SVPP1vd2UobKf1djztpi-DcYAFOFXQtF\n",
-      "From (redirected): https://drive.google.com/uc?id=1SVPP1vd2UobKf1djztpi-DcYAFOFXQtF&confirm=t&uuid=e28a7061-b546-4f60-b7c1-906f7ec75b5a\n",
+      "From (redirected): https://drive.google.com/uc?id=1SVPP1vd2UobKf1djztpi-DcYAFOFXQtF&confirm=t&uuid=395ca504-41ea-4ae8-ac79-0244ec0a04ba\n",
       "To: /home/runner/work/multi-echo-data-analysis/multi-echo-data-analysis/data/multi-echo-data-analysis/sub-04570.zip\n",
       "\r",
-      "  0%|          | 0.00/315M [00:00<?, ?B/s]\r",
-      "  0%|          | 524k/315M [00:00<01:04, 4.88MB/s]"
+      "  0%|          | 0.00/315M [00:00<?, ?B/s]"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
       "\r",
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-      "  7%|▋         | 22.0M/315M [00:00<00:03, 84.1MB/s]"
+      "  2%|▏         | 4.72M/315M [00:00<00:28, 10.8MB/s]\r",
+      "  3%|▎         | 8.91M/315M [00:00<00:18, 16.2MB/s]"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
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+      " 11%|█▏        | 35.7M/315M [00:00<00:04, 65.8MB/s]"
      ]
     },
     {
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      "output_type": "stream",
      "text": [
       "\r",
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      ]
     },
     {
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+      " 21%|██▏       | 67.1M/315M [00:01<00:02, 82.9MB/s]"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
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+      " 25%|██▍       | 77.1M/315M [00:01<00:03, 67.0MB/s]\r",
+      " 29%|██▉       | 90.7M/315M [00:01<00:02, 82.7MB/s]"
      ]
     },
     {
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+      " 35%|███▌      | 111M/315M [00:01<00:02, 83.0MB/s]"
      ]
     },
     {
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+      " 42%|████▏     | 132M/315M [00:01<00:01, 92.3MB/s]"
      ]
     },
     {
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      ]
     },
     {
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      ]
     },
     {
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      "output_type": "stream",
      "text": [
       "\r",
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-      " 92%|█████████▏| 290M/315M [00:02<00:00, 117MB/s]"
+      " 60%|██████    | 189M/315M [00:02<00:01, 78.5MB/s]"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
       "\r",
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+      " 68%|██████▊   | 214M/315M [00:03<00:01, 77.0MB/s]"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "\r",
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+      " 75%|███████▌  | 236M/315M [00:03<00:00, 79.2MB/s]"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "\r",
+      " 79%|███████▉  | 248M/315M [00:03<00:00, 88.4MB/s]\r",
+      " 82%|████████▏ | 258M/315M [00:03<00:00, 78.1MB/s]"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "\r",
+      " 86%|████████▌ | 269M/315M [00:03<00:00, 78.3MB/s]\r",
+      " 91%|█████████ | 286M/315M [00:04<00:00, 83.3MB/s]"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "\r",
+      " 94%|█████████▍| 297M/315M [00:04<00:00, 89.0MB/s]\r",
+      " 98%|█████████▊| 307M/315M [00:04<00:00, 91.9MB/s]"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "\r",
+      "100%|██████████| 315M/315M [00:04<00:00, 71.2MB/s]\n",
       "INFO patool: Extracting ./../data/multi-echo-data-analysis/sub-04570.zip ...\n"
      ]
     },

_sources/content/01_Optimal_Combination_with_t2smap.ipynb

@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "4e5095fd",
+   "id": "0bb32834",
    "metadata": {},
    "source": [
     "# Optimal combination with `t2smap`\n",
@@ -13,7 +13,7 @@
   {
    "cell_type": "code",
    "execution_count": 1,
-   "id": "7acc8737",
+   "id": "ea22a631",
    "metadata": {},
    "outputs": [
     {
@@ -54,7 +54,7 @@
   {
    "cell_type": "code",
    "execution_count": 2,
-   "id": "8278117a",
+   "id": "aa2d9f5f",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -91,7 +91,7 @@
   {
    "cell_type": "code",
    "execution_count": 3,
-   "id": "cf2e798c",
+   "id": "bc8461b4",
    "metadata": {},
    "outputs": [
     {
@@ -158,7 +158,7 @@
   {
    "cell_type": "code",
    "execution_count": 4,
-   "id": "a699610d",
+   "id": "a25f1ba6",
    "metadata": {},
    "outputs": [
     {
@@ -184,7 +184,7 @@
   {
    "cell_type": "code",
    "execution_count": 5,
-   "id": "d2f2ad25",
+   "id": "878a438c",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -202,7 +202,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "e2beb45c",
+   "id": "0d6573b9",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_t2starmap\n",
@@ -216,7 +216,7 @@
   {
    "cell_type": "code",
    "execution_count": 6,
-   "id": "ae0c5c68",
+   "id": "854552f3",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -234,7 +234,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "76f00325",
+   "id": "d86187c7",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_s0map\n",
@@ -248,7 +248,7 @@
   {
    "cell_type": "code",
    "execution_count": 7,
-   "id": "bc59ea10",
+   "id": "9b4a6656",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -307,7 +307,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "0296ab91",
+   "id": "b2164f9f",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_t2smap_epi_plots\n",
@@ -321,7 +321,7 @@
   {
    "cell_type": "code",
    "execution_count": 8,
-   "id": "2f6b73b2",
+   "id": "75477914",
    "metadata": {},
    "outputs": [
     {
@@ -385,7 +385,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "1f3fe229",
+   "id": "e25244f0",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_t2smap_t2snr\n",
@@ -399,7 +399,7 @@
   {
    "cell_type": "code",
    "execution_count": 9,
-   "id": "1bcabdd1",
+   "id": "14fe4a38",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -414,7 +414,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "866bab45",
+   "id": "1e65b67b",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_echo2_carpet\n",
@@ -428,7 +428,7 @@
   {
    "cell_type": "code",
    "execution_count": 10,
-   "id": "a47a96fe",
+   "id": "e86b42f0",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -442,7 +442,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "bcbe1e30",
+   "id": "4a53faac",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_optcom_carpet\n",