duckdb demo build #59
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| name: duckdb demo build | |
| on: | |
| pull_request_review: | |
| types: [submitted] | |
| jobs: | |
| mimic-iv-duckdb: | |
| # only run if PR is approved | |
| if: github.event.review.state == 'approved' | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| - name: Download duckdb CLI | |
| run: | | |
| wget https://github.com/duckdb/duckdb/releases/download/v0.6.1/duckdb_cli-linux-amd64.zip | |
| unzip duckdb_cli-linux-amd64.zip | |
| echo "$HOME/.local/bin" >> $GITHUB_PATH | |
| mkdir -p "$HOME/.local/bin" | |
| mv duckdb "$HOME/.local/bin/duckdb" | |
| - name: Download demo data | |
| uses: ./.github/actions/download-demo | |
| - name: Load icu/hosp data into duckdb | |
| run: | | |
| echo "Running duckdb build." | |
| cd ${BUILDCODE_PATH} | |
| ./import_duckdb.sh ./ | |
| echo `md5sum mimic4.db` | |
| env: | |
| BUILDCODE_PATH: mimic-iv/buildmimic/duckdb |