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sqlite demo db build #48

sqlite demo db build

sqlite demo db build #48

Workflow file for this run

name: sqlite demo db build
on:
pull_request_review:
types: [submitted]
jobs:
mimic-iv-sqlite:
# only run if PR is approved
if: github.event.review.state == 'approved'
runs-on: ubuntu-20.04
steps:
- name: Check out repository code
uses: actions/checkout@v3
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: '3.10'
- name: Python dependencies
run: |
pip install pandas
- name: Download demo data
uses: ./.github/actions/download-demo
- name: Load icu/hosp data into SQLite
run: |
echo "Running SQLite build."
python ${BUILDCODE_PATH}/import.py
echo `md5sum mimic4.db`
env:
BUILDCODE_PATH: mimic-iv/buildmimic/sqlite