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mimic-iv/concepts_postgres/demographics/icustay_hourly.sql

@@ -1,22 +1,38 @@
 -- THIS SCRIPT IS AUTOMATICALLY GENERATED. DO NOT EDIT IT DIRECTLY.
-DROP TABLE IF EXISTS mimiciv_derived.icustay_hourly; CREATE TABLE mimiciv_derived.icustay_hourly AS
-/* This query generates a row for every hour the patient is in the ICU. */ /* The hours are based on clock-hours (i.e. 02:00, 03:00). */ /* The hour clock starts 24 hours before the first heart rate measurement. */ /* Note that the time of the first heart rate measurement is ceilinged to */ /* the hour. */ /* this query extracts the cohort and every possible hour they were in the ICU */ /* this table can be to other tables on stay_id and (ENDTIME - 1 hour,ENDTIME] */ /* get first/last measurement time */
+DROP TABLE IF EXISTS icustay_hourly; CREATE TABLE icustay_hourly AS
+-- This query generates a row for every hour the patient is in the ICU.
+-- The hours are based on clock-hours (i.e. 02:00, 03:00).
+-- The hour clock starts 24 hours before the first heart rate measurement.
+-- Note that the time of the first heart rate measurement is ceilinged to
+-- the hour.
+
+-- this query extracts the cohort and every possible hour they were in the ICU
+-- this table can be to other tables on stay_id and (ENDTIME - 1 hour,ENDTIME]
+
+-- get first/last measurement time
 WITH all_hours AS (
-  SELECT
-    it.stay_id, /* round the intime up to the nearest hour */
-    CASE
-      WHEN DATE_TRUNC('HOUR', it.intime_hr) = it.intime_hr
-      THEN it.intime_hr
-      ELSE DATE_TRUNC('HOUR', it.intime_hr) + INTERVAL '1 HOUR'
-    END AS endtime, /* create integers for each charttime in hours from admission */ /* so 0 is admission time, 1 is one hour after admission, etc, */ /* up to ICU disch */ /*  we allow 24 hours before ICU admission (to grab labs before admit) */
-    ARRAY(SELECT
-      *
-    FROM GENERATE_SERIES(-24, CAST(CEIL(EXTRACT(EPOCH FROM it.outtime_hr - it.intime_hr) / 3600.0) AS INT))) AS hrs /* noqa: L016 */
-  FROM mimiciv_derived.icustay_times AS it
+    SELECT
+        it.stay_id
+
+        -- round the intime up to the nearest hour
+        , CASE
+            WHEN DATE_TRUNC('HOUR', it.intime_hr) = it.intime_hr
+                THEN it.intime_hr
+            ELSE
+                DATETIME_ADD(
+                    DATE_TRUNC('HOUR', it.intime_hr), INTERVAL '1' HOUR
+                )
+        END AS endtime
+        , hrs 
+        -- -- create integers for each charttime in hours from admission
+        -- -- so 0 is admission time, 1 is one hour after admission, etc,
+        -- -- up to ICU disch
+        -- --  we allow 24 hours before ICU admission (to grab labs before admit)
+        -- , GENERATE_ARRAY(-24, CAST(CEIL(DATETIME_DIFF(it.outtime_hr, it.intime_hr, 'HOUR')) AS INTEGER)) AS hrs -- noqa: L016
+    FROM mimiciv_derived.icustay_times it
+    CROSS JOIN GENERATE_ARRAY ( - 24, CAST ( CEIL ( DATETIME_DIFF ( it.outtime_hr, it.intime_hr, 'HOUR' ) ) AS INTEGER ) ) AS hrs 
 )
-SELECT
-  stay_id,
-  CAST(hr_unnested AS BIGINT) AS hr,
-  endtime + CAST(hr_unnested AS BIGINT) * INTERVAL '1 HOUR' AS endtime
+SELECT stay_id
+    , CAST ( hrs AS INTEGER ) AS hr
+    , DATETIME_ADD(endtime, concat( CAST ( hrs AS INTEGER ) ,' HOUR')::interval) AS endtime
 FROM all_hours
-CROSS JOIN UNNEST(all_hours.hrs) AS _t0(hr_unnested)