Bump dependencies for NumPy 2 compatibility #393

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Job	Run time
build-documentation	16s
test-deb10-i386	3m 19s
build (windows-latest, 3.9)	11s
build (windows-latest, 3.10)	12s
build (windows-latest, 3.11)	13s
build (windows-latest, 3.12)	9s
build (windows-latest, 3.13)	12s
build (ubuntu-latest, 3.9)	16s
build (ubuntu-latest, 3.10)	17s
build (ubuntu-latest, 3.11)	14s
build (ubuntu-latest, 3.12)	17s
build (ubuntu-latest, 3.13)	23s
build (macos-latest, 3.9)	12s
build (macos-latest, 3.10)	13s
build (macos-latest, 3.11)	13s
build (macos-latest, 3.12)	13s
build (macos-latest, 3.13)	17s
	7m 7s