Bump dependencies for NumPy 2 compatibility #394

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Job	Run time
build-documentation	15s
build (windows-latest, 3.9)	3m 34s
test-deb10-i386	3m 14s
build (windows-latest, 3.10)	3m 28s
build (windows-latest, 3.11)	3m 32s
build (windows-latest, 3.12)	3m 26s
build (windows-latest, 3.13)	3m 25s
build (ubuntu-latest, 3.9)	2m 47s
build (ubuntu-latest, 3.10)	3m 45s
build (ubuntu-latest, 3.11)	2m 49s
build (ubuntu-latest, 3.12)	2m 48s
build (ubuntu-latest, 3.13)	3m 16s
build (macos-latest, 3.9)	3m 10s
build (macos-latest, 3.10)	3m 1s
build (macos-latest, 3.11)	3m 46s
build (macos-latest, 3.12)	3m 7s
build (macos-latest, 3.13)	3m 28s
	52m 51s