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Update README.rst
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MLDataAnalytics authored Sep 17, 2024
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Expand Up @@ -75,10 +75,12 @@ Script usages
1. Prepare data
^^^^^^^^^^^^^^^

- a number of preprocessed fMRI scans that have been spatially aligned to a template space,
- a mask image for excluding voxels/vertices of uninterest,
- a brain template image/surface for visualization.
- a script can be found in `cli folder <https://github.com/MLDataAnalytics/pNet/tree/main/src/pnet/cli>`__ for preparing the brain template data and `precomputed templates <https://github.com/MLDataAnalytics/pNet/tree/main/src/pnet/Brain_Template>`__ are avaiable for data preprocessed with HCP pipelines.
- A number of preprocessed fMRI scans that have been spatially aligned to a template space,
- A mask image for excluding voxels/vertices of uninterest,
- A brain template image/surface for visualization.
- A script can be found in `cli folder <https://github.com/MLDataAnalytics/pNet/tree/main/src/pnet/cli>`__ for preparing the brain template data and `precomputed templates <https://github.com/MLDataAnalytics/pNet/tree/main/src/pnet/Brain_Template>`__ are avaiable for data preprocessed with HCP pipelines.
- Precomputed group FNs are provided in `Group_FNs <https://github.com/MLDataAnalytics/pNet/tree/main/src/pnet/Group_FNs>`__. They can used to guide the computation of personalized FNs.


2. Example files of scans and configuration
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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