ci(release): reinit release notes, update dist scripts

.github/workflows/ci.yml

@@ -230,23 +230,7 @@ jobs:
         if: runner.os == 'Linux'
         working-directory: usgslatex/usgsLaTeX
         run: sudo ./install.sh --all-users
-
-      - name: Install dependencies for ex-gwf-twri example model
-        if: runner.os == 'Linux'
-        working-directory: modflow6-examples/etc
-        run: |
-          # install extra Python packages
-          pip install -r requirements.pip.txt
-
-          # the example model needs executables to be on the path
-          echo "${{ github.workspace }}/modflow6/bin" >> $GITHUB_PATH
-          echo "${{ github.workspace }}/modflow6/bin/downloaded" >> $GITHUB_PATH
-
-      - name: Build ex-gwf-twri example model
-        if: runner.os == 'Linux'
-        working-directory: modflow6-examples/scripts
-        run: python ex-gwf-twri.py
-
+
       - name: Test distribution scripts
         working-directory: modflow6/distribution
         env:

.github/workflows/release.yml

@@ -212,21 +212,16 @@ jobs:
         working-directory: usgslatex/usgsLaTeX
         run: sudo ./install.sh --all-users
 
-      - name: Install dependencies for ex-gwf-twri example model
-        if: ${{ runner.os == 'Linux' && inputs.run_tests == true }}
-        working-directory: modflow6-examples/etc
-        run: |
-          # install extra Python packages
-          pip install -r requirements.pip.txt
-
-          # the example model needs executables to be on the path
-          echo "${{ github.workspace }}/modflow6/bin" >> $GITHUB_PATH
-          echo "${{ github.workspace }}/modflow6/bin/downloaded" >> $GITHUB_PATH
+      # - name: Install dependencies for ex-gwf-twri example model
+      #   if: ${{ runner.os == 'Linux' && inputs.run_tests == true }}
+      #   working-directory: modflow6-examples/etc
+      #   run: |
+      #     # install extra Python packages
+      #     pip install -r requirements.pip.txt
 
-      - name: Build ex-gwf-twri example model
-        if: ${{ runner.os == 'Linux' && inputs.run_tests == true }}
-        working-directory: modflow6-examples/scripts
-        run: python ex-gwf-twri.py
+      #     # the example model needs executables to be on the path
+      #     echo "${{ github.workspace }}/modflow6/bin" >> $GITHUB_PATH
+      #     echo "${{ github.workspace }}/modflow6/bin/downloaded" >> $GITHUB_PATH
 
       - name: Test distribution scripts
         if: ${{ inputs.run_tests == true }}
@@ -300,13 +295,18 @@ jobs:
           fi
           eval "$cmd"
 
+      - name: Update FloPy classes
+        working-directory: modflow6/autotest
+        run: python update_flopy.py
+
       - name: Download pre-built binaries
         uses: actions/download-artifact@v3
         with:
           name: bin-${{ runner.os }}
           path: bin
 
       - name: Install dependencies for building models
+        if: inputs.full == true
         working-directory: modflow6-examples/etc
         env:
           GITHUB_TOKEN: ${{ github.token }}
@@ -324,15 +324,6 @@ jobs:
 
           # the example model also needs mf2005
           get-modflow "${{ github.workspace }}/bin" --subset mf2005,triangle,gridgen
-
-      - name: Update FloPy
-        working-directory: modflow6/autotest
-        run: python update_flopy.py
-
-      - name: Build ex-gwf-twri example model
-        if: inputs.full != true
-        working-directory: modflow6-examples/scripts
-        run: python ex-gwf-twri.py
 
       - name: Build example models
         if: inputs.full == true
@@ -365,7 +356,7 @@ jobs:
           GITHUB_TOKEN: ${{ github.token }}
         run: |
           mkdir -p "${{ needs.build.outputs.distname }}/doc"
-          cmd="python modflow6/distribution/build_docs.py -b bin -o doc -e modflow6-examples"
+          cmd="python modflow6/distribution/build_docs.py -b bin -o doc"
           if [[ "${{ inputs.full }}" == "true" ]]; then
             cmd="$cmd --full"
           fi

CITATION.cff

@@ -2,8 +2,8 @@ cff-version: 1.2.0
 message: If you use this software, please cite the software itself.
 type: software
 title: MODFLOW 6 Modular Hydrologic Model
-version: 6.4.2+
-date-released: '2023-06-29'
+version: 6.5.0.dev0
+date-released: '2023-07-13'
 doi: 10.5066/F76Q1VQV
 abstract: MODFLOW 6 is an object-oriented program and framework developed to provide
   a platform for supporting multiple models and multiple types of models within the

README.md

@@ -3,7 +3,7 @@
 
 This is the development repository for the USGS MODFLOW 6 Hydrologic Model. The  official USGS distribution is available at [USGS Release Page](https://water.usgs.gov/ogw/modflow/MODFLOW.html).
 
-### Version 6.4.2+ (preliminary)
+### Version 6.5.0.dev0 (preliminary)
 
 [![GitHub release](https://img.shields.io/github/release/MODFLOW-USGS/modflow6.svg)](https://github.com/MODFLOW-USGS/modflow6/releases/latest)
 [![MODFLOW 6 continuous integration](https://github.com/MODFLOW-USGS/modflow6/actions/workflows/ci.yml/badge.svg)](https://github.com/MODFLOW-USGS/modflow6/actions/workflows/ci.yml)

autotest/test_cli.py

@@ -1,16 +1,10 @@
-import re
 import subprocess
 
 from conftest import project_root_path
 
 bin_path = project_root_path / "bin"
 
 
-def split_nonnumeric(s):
-    match = re.compile("[^0-9]").search(s)
-    return [s[:match.start()], s[match.start():]] if match else s
-
-
 def test_cli_version():
     output = " ".join(
         subprocess.check_output([str(bin_path / "mf6"), "-v"]).decode().split()
@@ -23,7 +17,5 @@ def test_cli_version():
     )
     print(version)
     v_split = version.split(".")
-    assert len(v_split) == 3
-    assert all(s.isdigit() for s in v_split[:2])
-    sol = split_nonnumeric(v_split[2])
-    assert sol[0].isdigit()
+    assert len(v_split) >= 2
+    assert all(s[-1].isdigit() for s in v_split[:2])

code.json

@@ -18,9 +18,9 @@
             "email": "[email protected]"
         },
         "laborHours": -1,
-        "version": "6.4.2+",
+        "version": "6.5.0.dev0",
         "date": {
-            "metadataLastUpdated": "2023-06-29"
+            "metadataLastUpdated": "2023-07-13"
         },
         "organization": "U.S. Geological Survey",
         "permissions": {

distribution/build_dist.py

@@ -4,7 +4,6 @@
 import shutil
 import sys
 import textwrap
-from collections import namedtuple
 from os import PathLike, environ
 from pathlib import Path
 from pprint import pprint
@@ -17,56 +16,16 @@
 from modflow_devtools.misc import get_model_paths
 
 from build_docs import build_documentation
-from build_makefiles import (
-    build_mf6_makefile,
-    build_mf5to6_makefile,
-    build_zbud6_makefile,
-)
+from build_makefiles import (build_mf5to6_makefile, build_mf6_makefile,
+                             build_zbud6_makefile)
 from utils import get_project_root_path, run_command
 
-_project_name = "MODFLOW 6"
-
 # default paths
 _project_root_path = get_project_root_path()
-_version_texf_path = _project_root_path / "doc" / "version.tex"
 _examples_repo_path = _project_root_path.parent / "modflow6-examples"
-_examples_path = _examples_repo_path / "examples"
 _build_path = _project_root_path / "builddir"
-_bin_path = _project_root_path / "bin"
-_docs_path = _project_root_path / "doc"
-_benchmarks_path = _project_root_path / "distribution" / ".benchmarks"
-
-# top-level directories included in distribution
-_included_dir_paths = [
-    "bin",
-    "doc",
-    "examples",
-    "src",
-    "srcbmi",
-    "msvs",
-    "make",
-    "utils",
-]
-
-Makefile = namedtuple("Makefile", ["app", "src_path", "out_path"])
-
-
-# makefiles included in distribution
-_makefiles = [
-    Makefile(app="mf6", src_path=_project_root_path / "src", out_path=Path("make")),
-    Makefile(
-        app="zbud6",
-        src_path=_project_root_path / "utils" / "zonebudget" / "src",
-        out_path=Path("utils") / "zonebudget" / "make",
-    ),
-    Makefile(
-        app="mf5to6",
-        src_path=_project_root_path / "utils" / "mf5to6" / "src",
-        out_path=Path("utils") / "mf5to6" / "make",
-    ),
-]
-
-# system-specific filenames, extensions, etc
+
+# OS-specific extensions
 _system = platform.system()
 _eext = ".exe" if _system == "Windows" else ""
 _soext = ".dll" if _system == "Windows" else ".so" if _system == "Linux" else ".dylib"
@@ -99,8 +58,9 @@ def copy_sources(output_path: PathLike):
 
     ignored = shutil.ignore_patterns(".DS_Store")
 
-    # copy top-level meson.build
+    # copy top-level meson.build and meson.options
     shutil.copy(_project_root_path / "meson.build", output_path)
+    shutil.copy(_project_root_path / "meson.options", output_path)
 
     # copy source folder
     src_path = _project_root_path / "src"
@@ -232,10 +192,6 @@ def setup_examples(
                 print(f"Execute permission set for {script_path}")
 
 
-def test_setup_examples():
-    pass
-
-
 def build_programs_meson(
     build_path: PathLike, bin_path: PathLike, overwrite: bool = False
 ):
@@ -446,13 +402,6 @@ def test_build_distribution(tmp_path, full):
         default=str(_examples_repo_path),
         help="Path to directory containing modflow6 example models",
     )
-    # parser.add_argument(
-    #     "-b",
-    #     "--benchmarks-path",
-    #     required=False,
-    #     default=str(_project_root_path / "distribution" / ".benchmarks"),
-    #     help="Path to directory containing benchmark results"
-    # )
     parser.add_argument(
         "--full",
         required=False,
@@ -469,7 +418,6 @@ def test_build_distribution(tmp_path, full):
         help="Recreate and overwrite existing artifacts",
     )
     args = parser.parse_args()
-
     build_path = Path(args.build_path)
     out_path = Path(args.output_path)
     examples_repo_path = (