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Add labelconvert LUTs: Schaefer != 200
Created by: Philip Pruckner <[email protected]>
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share/mrtrix3/labelconvert/Schaefer2018_1000Parcels_17Networks_FreeSurferSGM.txt
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share/mrtrix3/labelconvert/Schaefer2018_1000Parcels_7Networks_FreeSurferSGM.txt
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share/mrtrix3/labelconvert/Schaefer2018_100Parcels_17Networks_FreeSurferSGM.txt
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,140 @@ | ||
| # Default configuration file for MRtrix command labelconfig | ||
| # Extracts the relevant cortical grey matter parcellations from the Schaefer2018 atlas | ||
| # and relevant subcortical grey matter parcellations from the default FreeSurfer segmentation | ||
| # (desikan_killiany) | ||
|
|
||
| # As of 07/2023 the left accumbens area is incorrectly labeled | ||
| # as "Left-Accumbens-a" instead of "Left-Accumbens-area" | ||
| # in the official Schaefer2018 LUTs | ||
| # (see https://github.com/ThomasYeoLab/CBIG/issues/49). | ||
| # Since labelconvert uses string recognition, | ||
| # we provide both strings ("Left-Accumbens-a"/"Left-Accumbens-area") | ||
| # and match them with label 58. | ||
| # The second label can be omitted should the issue be resolved in the future. | ||
|
|
||
| 58 Left-Accumbens-a | ||
|
|
||
| 0 Unknown | ||
|
|
||
| 1 17Networks_LH_VisCent_ExStr_1 | ||
| 2 17Networks_LH_VisCent_ExStr_2 | ||
| 3 17Networks_LH_VisCent_Striate_1 | ||
| 4 17Networks_LH_VisCent_ExStr_3 | ||
| 5 17Networks_LH_VisPeri_ExStrInf_1 | ||
| 6 17Networks_LH_VisPeri_StriCal_1 | ||
| 7 17Networks_LH_VisPeri_ExStrSup_1 | ||
| 8 17Networks_LH_SomMotA_1 | ||
| 9 17Networks_LH_SomMotA_2 | ||
| 10 17Networks_LH_SomMotB_Aud_1 | ||
| 11 17Networks_LH_SomMotB_S2_1 | ||
| 12 17Networks_LH_SomMotB_S2_2 | ||
| 13 17Networks_LH_SomMotB_Cent_1 | ||
| 14 17Networks_LH_DorsAttnA_TempOcc_1 | ||
| 15 17Networks_LH_DorsAttnA_ParOcc_1 | ||
| 16 17Networks_LH_DorsAttnA_SPL_1 | ||
| 17 17Networks_LH_DorsAttnB_PostC_1 | ||
| 18 17Networks_LH_DorsAttnB_PostC_2 | ||
| 19 17Networks_LH_DorsAttnB_PostC_3 | ||
| 20 17Networks_LH_DorsAttnB_FEF_1 | ||
| 21 17Networks_LH_SalVentAttnA_ParOper_1 | ||
| 22 17Networks_LH_SalVentAttnA_Ins_1 | ||
| 23 17Networks_LH_SalVentAttnA_Ins_2 | ||
| 24 17Networks_LH_SalVentAttnA_ParMed_1 | ||
| 25 17Networks_LH_SalVentAttnA_FrMed_1 | ||
| 26 17Networks_LH_SalVentAttnB_PFCl_1 | ||
| 27 17Networks_LH_SalVentAttnB_PFCmp_1 | ||
| 28 17Networks_LH_LimbicB_OFC_1 | ||
| 29 17Networks_LH_LimbicA_TempPole_1 | ||
| 30 17Networks_LH_LimbicA_TempPole_2 | ||
| 31 17Networks_LH_ContA_IPS_1 | ||
| 32 17Networks_LH_ContA_PFCl_1 | ||
| 33 17Networks_LH_ContA_PFCl_2 | ||
| 34 17Networks_LH_ContB_PFClv_1 | ||
| 35 17Networks_LH_ContC_pCun_1 | ||
| 36 17Networks_LH_ContC_pCun_2 | ||
| 37 17Networks_LH_ContC_Cingp_1 | ||
| 38 17Networks_LH_DefaultA_PFCd_1 | ||
| 39 17Networks_LH_DefaultA_pCunPCC_1 | ||
| 40 17Networks_LH_DefaultA_PFCm_1 | ||
| 41 17Networks_LH_DefaultB_Temp_1 | ||
| 42 17Networks_LH_DefaultB_Temp_2 | ||
| 43 17Networks_LH_DefaultB_IPL_1 | ||
| 44 17Networks_LH_DefaultB_PFCd_1 | ||
| 45 17Networks_LH_DefaultB_PFCl_1 | ||
| 46 17Networks_LH_DefaultB_PFCv_1 | ||
| 47 17Networks_LH_DefaultB_PFCv_2 | ||
| 48 17Networks_LH_DefaultC_Rsp_1 | ||
| 49 17Networks_LH_DefaultC_PHC_1 | ||
| 50 17Networks_LH_TempPar_1 | ||
|
|
||
| 51 Left-Cerebellum-Cortex | ||
|
|
||
| 52 Left-Thalamus-Proper | ||
| 53 Left-Caudate | ||
| 54 Left-Putamen | ||
| 55 Left-Pallidum | ||
| 56 Left-Hippocampus | ||
| 57 Left-Amygdala | ||
| 58 Left-Accumbens-area | ||
|
|
||
| 59 Right-Thalamus-Proper | ||
| 60 Right-Caudate | ||
| 61 Right-Putamen | ||
| 62 Right-Pallidum | ||
| 63 Right-Hippocampus | ||
| 64 Right-Amygdala | ||
| 65 Right-Accumbens-area | ||
|
|
||
| 66 17Networks_RH_VisCent_ExStr_1 | ||
| 67 17Networks_RH_VisCent_ExStr_2 | ||
| 68 17Networks_RH_VisCent_ExStr_3 | ||
| 69 17Networks_RH_VisPeri_StriCal_1 | ||
| 70 17Networks_RH_VisPeri_ExStrInf_1 | ||
| 71 17Networks_RH_VisPeri_ExStrSup_1 | ||
| 72 17Networks_RH_SomMotA_1 | ||
| 73 17Networks_RH_SomMotA_2 | ||
| 74 17Networks_RH_SomMotA_3 | ||
| 75 17Networks_RH_SomMotA_4 | ||
| 76 17Networks_RH_SomMotB_Aud_1 | ||
| 77 17Networks_RH_SomMotB_S2_1 | ||
| 78 17Networks_RH_SomMotB_S2_2 | ||
| 79 17Networks_RH_SomMotB_Cent_1 | ||
| 80 17Networks_RH_DorsAttnA_TempOcc_1 | ||
| 81 17Networks_RH_DorsAttnA_ParOcc_1 | ||
| 82 17Networks_RH_DorsAttnA_SPL_1 | ||
| 83 17Networks_RH_DorsAttnB_PostC_1 | ||
| 84 17Networks_RH_DorsAttnB_PostC_2 | ||
| 85 17Networks_RH_DorsAttnB_FEF_1 | ||
| 86 17Networks_RH_SalVentAttnA_ParOper_1 | ||
| 87 17Networks_RH_SalVentAttnA_Ins_1 | ||
| 88 17Networks_RH_SalVentAttnA_ParMed_1 | ||
| 89 17Networks_RH_SalVentAttnA_FrMed_1 | ||
| 90 17Networks_RH_SalVentAttnB_IPL_1 | ||
| 91 17Networks_RH_SalVentAttnB_PFCl_1 | ||
| 92 17Networks_RH_SalVentAttnB_PFCmp_1 | ||
| 93 17Networks_RH_LimbicB_OFC_1 | ||
| 94 17Networks_RH_LimbicA_TempPole_1 | ||
| 95 17Networks_RH_ContA_IPS_1 | ||
| 96 17Networks_RH_ContA_PFCl_1 | ||
| 97 17Networks_RH_ContA_PFCl_2 | ||
| 98 17Networks_RH_ContB_Temp_1 | ||
| 99 17Networks_RH_ContB_IPL_1 | ||
| 100 17Networks_RH_ContB_PFCld_1 | ||
| 101 17Networks_RH_ContB_PFClv_1 | ||
| 102 17Networks_RH_ContC_Cingp_1 | ||
| 103 17Networks_RH_ContC_pCun_1 | ||
| 104 17Networks_RH_DefaultA_IPL_1 | ||
| 105 17Networks_RH_DefaultA_PFCd_1 | ||
| 106 17Networks_RH_DefaultA_pCunPCC_1 | ||
| 107 17Networks_RH_DefaultA_PFCm_1 | ||
| 108 17Networks_RH_DefaultB_PFCd_1 | ||
| 109 17Networks_RH_DefaultB_PFCv_1 | ||
| 110 17Networks_RH_DefaultB_PFCv_2 | ||
| 111 17Networks_RH_DefaultC_Rsp_1 | ||
| 112 17Networks_RH_DefaultC_PHC_1 | ||
| 113 17Networks_RH_TempPar_1 | ||
| 114 17Networks_RH_TempPar_2 | ||
| 115 17Networks_RH_TempPar_3 | ||
|
|
||
| 116 Right-Cerebellum-Cortex | ||
|
|
139 changes: 139 additions & 0 deletions
139
share/mrtrix3/labelconvert/Schaefer2018_100Parcels_7Networks_FreeSurferSGM.txt
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,139 @@ | ||
| # Default configuration file for MRtrix command labelconfig | ||
| # Extracts the relevant cortical grey matter parcellations from the Schaefer2018 atlas | ||
| # and relevant subcortical grey matter parcellations from the default FreeSurfer segmentation | ||
| # (desikan_killiany) | ||
|
|
||
| # As of 07/2023 the left accumbens area is incorrectly labeled | ||
| # as "Left-Accumbens-a" instead of "Left-Accumbens-area" | ||
| # in the official Schaefer2018 LUTs | ||
| # (see https://github.com/ThomasYeoLab/CBIG/issues/49). | ||
| # Since labelconvert uses string recognition, | ||
| # we provide both strings ("Left-Accumbens-a"/"Left-Accumbens-area") | ||
| # and match them with label 58. | ||
| # The second label can be omitted should the issue be resolved in the future. | ||
|
|
||
| 58 Left-Accumbens-a | ||
|
|
||
| 0 Unknown | ||
|
|
||
| 1 7Networks_LH_Vis_1 | ||
| 2 7Networks_LH_Vis_2 | ||
| 3 7Networks_LH_Vis_3 | ||
| 4 7Networks_LH_Vis_4 | ||
| 5 7Networks_LH_Vis_5 | ||
| 6 7Networks_LH_Vis_6 | ||
| 7 7Networks_LH_Vis_7 | ||
| 8 7Networks_LH_Vis_8 | ||
| 9 7Networks_LH_Vis_9 | ||
| 10 7Networks_LH_SomMot_1 | ||
| 11 7Networks_LH_SomMot_2 | ||
| 12 7Networks_LH_SomMot_3 | ||
| 13 7Networks_LH_SomMot_4 | ||
| 14 7Networks_LH_SomMot_5 | ||
| 15 7Networks_LH_SomMot_6 | ||
| 16 7Networks_LH_DorsAttn_Post_1 | ||
| 17 7Networks_LH_DorsAttn_Post_2 | ||
| 18 7Networks_LH_DorsAttn_Post_3 | ||
| 19 7Networks_LH_DorsAttn_Post_4 | ||
| 20 7Networks_LH_DorsAttn_Post_5 | ||
| 21 7Networks_LH_DorsAttn_Post_6 | ||
| 22 7Networks_LH_DorsAttn_PrCv_1 | ||
| 23 7Networks_LH_DorsAttn_FEF_1 | ||
| 24 7Networks_LH_SalVentAttn_ParOper_1 | ||
| 25 7Networks_LH_SalVentAttn_FrOperIns_1 | ||
| 26 7Networks_LH_SalVentAttn_FrOperIns_2 | ||
| 27 7Networks_LH_SalVentAttn_PFCl_1 | ||
| 28 7Networks_LH_SalVentAttn_Med_1 | ||
| 29 7Networks_LH_SalVentAttn_Med_2 | ||
| 30 7Networks_LH_SalVentAttn_Med_3 | ||
| 31 7Networks_LH_Limbic_OFC_1 | ||
| 32 7Networks_LH_Limbic_TempPole_1 | ||
| 33 7Networks_LH_Limbic_TempPole_2 | ||
| 34 7Networks_LH_Cont_Par_1 | ||
| 35 7Networks_LH_Cont_PFCl_1 | ||
| 36 7Networks_LH_Cont_pCun_1 | ||
| 37 7Networks_LH_Cont_Cing_1 | ||
| 38 7Networks_LH_Default_Temp_1 | ||
| 39 7Networks_LH_Default_Temp_2 | ||
| 40 7Networks_LH_Default_Par_1 | ||
| 41 7Networks_LH_Default_Par_2 | ||
| 42 7Networks_LH_Default_PFC_1 | ||
| 43 7Networks_LH_Default_PFC_2 | ||
| 44 7Networks_LH_Default_PFC_3 | ||
| 45 7Networks_LH_Default_PFC_4 | ||
| 46 7Networks_LH_Default_PFC_5 | ||
| 47 7Networks_LH_Default_PFC_6 | ||
| 48 7Networks_LH_Default_PFC_7 | ||
| 49 7Networks_LH_Default_pCunPCC_1 | ||
| 50 7Networks_LH_Default_pCunPCC_2 | ||
|
|
||
| 51 Left-Cerebellum-Cortex | ||
|
|
||
| 52 Left-Thalamus-Proper | ||
| 53 Left-Caudate | ||
| 54 Left-Putamen | ||
| 55 Left-Pallidum | ||
| 56 Left-Hippocampus | ||
| 57 Left-Amygdala | ||
| 58 Left-Accumbens-area | ||
|
|
||
| 59 Right-Thalamus-Proper | ||
| 60 Right-Caudate | ||
| 61 Right-Putamen | ||
| 62 Right-Pallidum | ||
| 63 Right-Hippocampus | ||
| 64 Right-Amygdala | ||
| 65 Right-Accumbens-area | ||
|
|
||
| 66 7Networks_RH_Vis_1 | ||
| 67 7Networks_RH_Vis_2 | ||
| 68 7Networks_RH_Vis_3 | ||
| 69 7Networks_RH_Vis_4 | ||
| 70 7Networks_RH_Vis_5 | ||
| 71 7Networks_RH_Vis_6 | ||
| 72 7Networks_RH_Vis_7 | ||
| 73 7Networks_RH_Vis_8 | ||
| 74 7Networks_RH_SomMot_1 | ||
| 75 7Networks_RH_SomMot_2 | ||
| 76 7Networks_RH_SomMot_3 | ||
| 77 7Networks_RH_SomMot_4 | ||
| 78 7Networks_RH_SomMot_5 | ||
| 79 7Networks_RH_SomMot_6 | ||
| 80 7Networks_RH_SomMot_7 | ||
| 81 7Networks_RH_SomMot_8 | ||
| 82 7Networks_RH_DorsAttn_Post_1 | ||
| 83 7Networks_RH_DorsAttn_Post_2 | ||
| 84 7Networks_RH_DorsAttn_Post_3 | ||
| 85 7Networks_RH_DorsAttn_Post_4 | ||
| 86 7Networks_RH_DorsAttn_Post_5 | ||
| 87 7Networks_RH_DorsAttn_PrCv_1 | ||
| 88 7Networks_RH_DorsAttn_FEF_1 | ||
| 89 7Networks_RH_SalVentAttn_TempOccPar_1 | ||
| 90 7Networks_RH_SalVentAttn_TempOccPar_2 | ||
| 91 7Networks_RH_SalVentAttn_FrOperIns_1 | ||
| 92 7Networks_RH_SalVentAttn_Med_1 | ||
| 93 7Networks_RH_SalVentAttn_Med_2 | ||
| 94 7Networks_RH_Limbic_OFC_1 | ||
| 95 7Networks_RH_Limbic_TempPole_1 | ||
| 96 7Networks_RH_Cont_Par_1 | ||
| 97 7Networks_RH_Cont_Par_2 | ||
| 98 7Networks_RH_Cont_PFCl_1 | ||
| 99 7Networks_RH_Cont_PFCl_2 | ||
| 100 7Networks_RH_Cont_PFCl_3 | ||
| 101 7Networks_RH_Cont_PFCl_4 | ||
| 102 7Networks_RH_Cont_Cing_1 | ||
| 103 7Networks_RH_Cont_PFCmp_1 | ||
| 104 7Networks_RH_Cont_pCun_1 | ||
| 105 7Networks_RH_Default_Par_1 | ||
| 106 7Networks_RH_Default_Temp_1 | ||
| 107 7Networks_RH_Default_Temp_2 | ||
| 108 7Networks_RH_Default_Temp_3 | ||
| 109 7Networks_RH_Default_PFCv_1 | ||
| 110 7Networks_RH_Default_PFCv_2 | ||
| 111 7Networks_RH_Default_PFCdPFCm_1 | ||
| 112 7Networks_RH_Default_PFCdPFCm_2 | ||
| 113 7Networks_RH_Default_PFCdPFCm_3 | ||
| 114 7Networks_RH_Default_pCunPCC_1 | ||
| 115 7Networks_RH_Default_pCunPCC_2 | ||
|
|
||
| 116 Right-Cerebellum-Cortex |
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