save n_masks to single-cell dataset

MannLabs · Jan 27, 2025 · 07098c4 · 07098c4
1 parent e72c336
commit 07098c4
Showing 1 changed file with 6 additions and 0 deletions.
diff --git a/src/scportrait/pipeline/extraction.py b/src/scportrait/pipeline/extraction.py
@@ -732,6 +732,12 @@ def _transfer_tempmmap_to_hdf5(self):
                 dtype=h5py.special_dtype(vlen=str),
             )
 
+            hf.create_dataset(
+                "n_masks",
+                data=self.n_masks,
+                dtype=int,
+            )
+
             self.log("channel information created.")
 
         # cleanup memory