Merge branch 'mvdbeek-sam_tag'

MarWoes · Jan 30, 2018 · a85445a · a85445a
2 parents 625d606 + 38e4dfd
commit a85445a
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diff --git a/igv.properties b/igv.properties
@@ -5,6 +5,7 @@ SAM.SHOW_SOFT_CLIPPED=true
 SAM.SHOW_JUNCTION_TRACK=false
 IGV.Bounds=0,0,1280,1680
 SAM.COLOR_BY=READ_STRAND
+SAM.COLOR_BY_TAG=XT
 IGV.Frame.ExtendedState=0
 SHOW_SEQUENCE_TRANSLATION=false
 SAM.DOWNSAMPLE_READS=true

diff --git a/public/viper/pages/inspector/inspector.html b/public/viper/pages/inspector/inspector.html
@@ -98,6 +98,17 @@ <h4>Visualization settings</h4>
             <option value="UNEXPECTED_PAIR">insert size and pair orientation</option>
             <option value="FIRST_OF_PAIR_STRAND">first-of-pair strand</option>
             <option value="READ_GROUP">read group</option>
+            <option value="TAG">tag</option>
+          </select>
+        </div>
+        <div ng-if="inspectorCtrl.configuration['SAM.COLOR_BY'] == 'TAG'" class="form-group" ng-class="{ 'has-error': inspectorCtrl.configuration['SAM.COLOR_BY_TAG'] == null}">
+          <label>Color reads by tag:</label>
+          <input
+            type="text"
+            class="form-control"
+            ng-pattern="/^[A-Za-z][A-Za-z0-9]$/"
+            ng-model="inspectorCtrl.configuration['SAM.COLOR_BY_TAG']"
+            ng-change="inspectorCtrl.changeIGVSetting('SAM.COLOR_BY_TAG')">
           </select>
         </div>
         <div class="form-group">