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Marius Wöste
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@@ -53,19 +53,20 @@ These parameters are optional and may be omitted using the default values: | |
| *xvfbHeight* | When using `Xvfb`, create a window with this height. | `1680` | | ||
| *igvMaxMemory* | Maximum heap size of the IGV process. | `1200` | | ||
| *xslxExportWindowSize* | When creating `.xlsx` files, this improves memory usage. Only change if exceptions occur during `.xlsx` export. | `1000` | | ||
| *fastaRef* | `.fasta` reference file or IGV reference key (e.g. `hg19`). | | ||
| *fastaRef* | `.fasta` reference file or IGV reference key (e.g. `hg19`). Set to a `.fasta` file for improved performance.| | ||
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### Examples | ||
## Examples | ||
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Some example `.bam` files and sample `.csv`call files can be found on [Sciebo](https://uni-muenster.sciebo.de/index.php/s/Qf6xIn2WDOyHhFN). | ||
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The VIPER icon was provided by courtesy of [Niké Jenny Bruinsma](https://thenounproject.com/search/?q=snake&i=158882). | ||
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### Improving VIPER | ||
## Improving VIPER | ||
You encountered any errors or have ideas that might improve VIPER? | ||
Feel free to open an [issue](https://github.com/MarWoes/viper/issues) or write me an e-mail: [[email protected]](mailto:[email protected]) | ||
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### Citing | ||
## Citing | ||
Please make sure to cite the [applications note](https://doi.org/10.1093/bioinformatics/bty022) when using VIPER for research purposes: | ||
> Marius Wöste, Martin Dugas; VIPER: a web application for rapid expert review of variant calls, Bioinformatics | ||
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The VIPER icon was provided by courtesy of [Niké Jenny Bruinsma](https://thenounproject.com/search/?q=snake&i=158882). |