Back to malloc/free - but postpone free until end of function scope... #206
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| name: mcstas-basictest | |
| on: | |
| push: | |
| schedule: | |
| - cron: '30 23 * * 0' # 23:30 every Sunday | |
| workflow_dispatch: | |
| inputs: | |
| manual-debugging: | |
| type: boolean | |
| description: Launch manual debugging tmate for inspection (automatic in case of errors) | |
| default: false | |
| jobs: | |
| build: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - { os: ubuntu-20.04, CC: gcc-10, CXX: g++-10, python: '3.8' } | |
| - { os: ubuntu-22.04, CC: gcc, CXX: g++, python: '3.9' } | |
| - { os: ubuntu-22.04, CC: gcc, CXX: g++, python: '3.10' } | |
| - { os: ubuntu-22.04, CC: clang, CXX: clang++, python: '3.11' } | |
| - { os: ubuntu-22.04, CC: gcc-12, CXX: g++-12, python: '3.11' } | |
| - { os: macos-11, CC: clang, CXX: clang++, python: "3.10" } | |
| - { os: macos-12, CC: clang, CXX: clang++, python: "3.11" } | |
| - { os: macos-13, CC: clang, CXX: clang++, python: "3.11" } | |
| - { os: windows-latest, CC: gcc, CXX: g++, python: "3.11" } | |
| name: ${{ matrix.os }}.${{ matrix.CC }}.python-${{ matrix.python }} | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| CC: ${{ matrix.CC }} | |
| CXX: ${{ matrix.CXX }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| path: src | |
| - name: Setup python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Setup Bison (macOS) | |
| id: setup-flex-bison-macos | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew install bison flex | |
| - name: Setup Bison (Windows) | |
| id: setup-flex-bison-Windows | |
| if: runner.os == 'Windows' | |
| run: | | |
| choco install winflexbison3 | |
| pip install mslex | |
| - name: Setup OpenMPI (Linux) | |
| id: setup-openmpi-linux | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt -y install libopenmpi-dev | |
| - name: Setup OpenMPI (macOS-12,13) | |
| id: setup-openmpi-macos12 | |
| if: runner.os == 'macOS' && matrix.os != 'macos-11' | |
| run: | | |
| brew install openmpi | |
| - name: Check versions | |
| id: version-checks | |
| run: | | |
| which python3 | |
| python3 --version | |
| which cmake | |
| cmake --version | |
| #NB: bison and flex in path are actually too old, on mac we | |
| #inject these via a brew keg later | |
| - name: Configure build and install mcstas | |
| id: mcstas-install | |
| run: | | |
| if [ "$RUNNER_OS" == "macOS" ]; then export SDKROOT=$(xcrun --sdk macosx --show-sdk-path); fi | |
| set -e | |
| set -u | |
| set -x | |
| mkdir build_mcstas | |
| cd build_mcstas | |
| export EXTRA_ARGS_FOR_CMAKE="" | |
| if [ "$RUNNER_OS" == "macOS" ]; then export EXTRA_ARGS_FOR_CMAKE="-DBISON_EXECUTABLE=/usr/local/opt/bison/bin/bison -DFLEX_EXECUTABLE=/usr/local/opt/flex/bin/flex"; fi | |
| if [ "$RUNNER_OS" == "Linux" ]; then export EXTRA_ARGS_FOR_CMAKE="-DNEXUSLIB=/usr/lib -DNEXUSINCLUDE=/usr/include/nexus"; fi | |
| cmake \ | |
| -DCMAKE_INSTALL_PREFIX=../install_mcstas \ | |
| -S ../src \ | |
| -G "Unix Makefiles" \ | |
| -DMCVERSION="3.99.99" \ | |
| -DMCCODE_BUILD_CONDA_PKG=ON \ | |
| -DBUILD_SHARED_LIBS=ON \ | |
| -DCMAKE_INSTALL_LIBDIR=lib \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DBUILD_MCSTAS=ON \ | |
| -DMCCODE_USE_LEGACY_DESTINATIONS=OFF \ | |
| -DBUILD_TOOLS=ON \ | |
| -DENABLE_COMPONENTS=ON \ | |
| -DENSURE_MCPL=ON \ | |
| -DENSURE_NCRYSTAL=OFF \ | |
| -DENABLE_CIF2HKL=OFF \ | |
| -DENABLE_NEUTRONICS=OFF \ | |
| ${EXTRA_ARGS_FOR_CMAKE} | |
| cmake --build . --config Release | |
| cmake --build . --target install --config Release | |
| export MCSTAS_EXECUTABLE="mcstas" | |
| export MCRUN_EXECUTABLE="mcrun" | |
| if [ "$RUNNER_OS" == "Windows" ]; | |
| then | |
| export MCSTAS_EXECUTABLE="mcstas.exe" | |
| export MCRUN_EXECUTABLE="mcrun.bat" | |
| fi | |
| test -f "../install_mcstas/bin/${MCSTAS_EXECUTABLE}" | |
| test -f "../install_mcstas/bin/${MCRUN_EXECUTABLE}" | |
| test -f "../install_mcstas/share/mcstas/tools/Python/mccodelib/__init__.py" | |
| test -d "../install_mcstas/share/mcstas/resources/data" | |
| echo ******************************************************************************* | |
| echo Resulting mccode_config.json: | |
| echo ******************************************************************************* | |
| cat ../install_mcstas/share/mcstas/tools/Python/mccodelib/mccode_config.json | |
| echo ******************************************************************************* | |
| - name: Pip install various | |
| id: pip-install | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| python3 -mpip install PyYAML ply McStasscript | |
| if [ "$RUNNER_OS" != "Windows" ]; | |
| then | |
| python3 -mpip install ncrystal | |
| fi | |
| - name: Launch BNL_H8 instrument | |
| id: h8-test | |
| # Status: Works on Windows + Unixes | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| export MCSTAS_EXECUTABLE="mcstas" | |
| export MCSTAS_PYGEN_EXECUTABLE="mcstas-pygen" | |
| export MCRUN_EXECUTABLE="mcrun" | |
| if [ "$RUNNER_OS" == "Windows" ]; | |
| then | |
| export MCSTAS_EXECUTABLE="mcstas.exe" | |
| export MCSTAS_PYGEN_EXECUTABLE="mcstas-pygen.exe" | |
| export MCRUN_EXECUTABLE="mcrun.bat" | |
| fi | |
| test -f ./install_mcstas/bin/${MCSTAS_EXECUTABLE} | |
| ./install_mcstas/bin/${MCSTAS_EXECUTABLE} --version | |
| mkdir run_BNL_H8 && cd run_BNL_H8 | |
| cp ../install_mcstas/share/mcstas/resources/examples/BNL/BNL_H8/BNL_H8.instr . | |
| ../install_mcstas/bin/${MCRUN_EXECUTABLE} BNL_H8.instr lambda=2.36 | |
| ../install_mcstas/bin/${MCSTAS_PYGEN_EXECUTABLE} BNL_H8.instr | |
| - name: Launch BNL_H8 instrument (MPI) | |
| id: h8-test-mpi | |
| if: runner.os == 'Linux' || (runner.os == 'macOS' && matrix.os != 'macos-11') # Linux or macos-12/13 only | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| export MCSTAS_EXECUTABLE="mcstas" | |
| export MCSTAS_PYGEN_EXECUTABLE="mcstas-pygen" | |
| export MCRUN_EXECUTABLE="mcrun" | |
| test -f ./install_mcstas/bin/${MCSTAS_EXECUTABLE} | |
| ./install_mcstas/bin/${MCSTAS_EXECUTABLE} --version | |
| mkdir run_BNL_H8_mpi && cd run_BNL_H8_mpi | |
| cp ../install_mcstas/share/mcstas/resources/examples/BNL/BNL_H8/BNL_H8.instr . | |
| ../install_mcstas/bin/${MCRUN_EXECUTABLE} --mpi=2 BNL_H8.instr lambda=2.36 | |
| - name: Launch MCPL test instrument | |
| id: mcpl-test | |
| if: runner.os == 'Linux' || runner.os == 'macOS' # Linux or macOS only | |
| # Status: Works on Unixes ("wrapper batches missing for Windows") | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| export MCSTAS_EXECUTABLE="mcstas" | |
| export MCRUN_EXECUTABLE="mcrun" | |
| export PATH=${PATH}:${PWD}/install_mcstas/bin/:${PWD}/install_mcstas/mcstas/3.99.99/bin/ | |
| test -f ./install_mcstas/bin/${MCSTAS_EXECUTABLE} | |
| ./install_mcstas/bin/${MCSTAS_EXECUTABLE} --version | |
| mkdir run_ESS_BEER_MCPL && cd run_ESS_BEER_MCPL | |
| cp ../install_mcstas/share/mcstas/resources/examples/ESS/ESS_BEER_MCPL/* . | |
| ../install_mcstas/bin/${MCRUN_EXECUTABLE} ESS_BEER_MCPL.instr repetition=50 | |
| - name: Launch MCPL test instrument (mpi) | |
| id: mcpl-test-mpi | |
| if: runner.os == 'Linux' || (runner.os == 'macOS' && matrix.os != 'macos-11') # Linux or macos-12/13 only | |
| # Status: Works on Unixes ("wrapper batches missing for Windows") | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| export MCSTAS_EXECUTABLE="mcstas" | |
| export MCRUN_EXECUTABLE="mcrun" | |
| export PATH=${PATH}:${PWD}/install_mcstas/bin/:${PWD}/install_mcstas/mcstas/3.99.99/bin/ | |
| test -f ./install_mcstas/bin/${MCSTAS_EXECUTABLE} | |
| ./install_mcstas/bin/${MCSTAS_EXECUTABLE} --version | |
| mkdir run_ESS_BEER_MCPL_mpi && cd run_ESS_BEER_MCPL_mpi | |
| cp ../install_mcstas/share/mcstas/resources/examples/ESS/ESS_BEER_MCPL/* . | |
| ../install_mcstas/bin/${MCRUN_EXECUTABLE} --mpi=2 ESS_BEER_MCPL.instr repetition=100 | |
| - name: Launch NCrystal test instrument | |
| id: ncrystal-test | |
| if: runner.os == 'Linux' || runner.os == 'macOS' # Linux or macOS only | |
| # Status: Works on Unixes ("ncrystal missing for Windows") | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| export MCSTAS_EXECUTABLE="mcstas" | |
| export MCRUN_EXECUTABLE="mcrun" | |
| export PATH=${PATH}:${PWD}/install_mcstas/bin/:${PWD}/install_mcstas/mcstas/3.99.99/bin/ | |
| test -f ./install_mcstas/bin/${MCSTAS_EXECUTABLE} | |
| ./install_mcstas/bin/${MCSTAS_EXECUTABLE} --version | |
| mkdir run_NCrystal_example && cd run_NCrystal_example | |
| cp ../install_mcstas/share/mcstas/resources/examples/NCrystal/NCrystal_example/NCrystal_example.instr . | |
| ../install_mcstas/bin/${MCRUN_EXECUTABLE} NCrystal_example.instr sample_cfg="Y2O3_sg206_Yttrium_Oxide.ncmat\;density=0.6x" | |
| - name: Launch NCrystal test instrument (mpi) | |
| id: ncrystal-test-mpi | |
| if: runner.os == 'Linux' | |
| # Status: Works on Unixes ("ncrystal missing for Windows") | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| export MCSTAS_EXECUTABLE="mcstas" | |
| export MCRUN_EXECUTABLE="mcrun" | |
| export PATH=${PATH}:${PWD}/install_mcstas/bin/:${PWD}/install_mcstas/mcstas/3.99.99/bin/ | |
| test -f ./install_mcstas/bin/${MCSTAS_EXECUTABLE} | |
| ./install_mcstas/bin/${MCSTAS_EXECUTABLE} --version | |
| mkdir run_NCrystal_example_mpi && cd run_NCrystal_example_mpi | |
| cp ../install_mcstas/share/mcstas/resources/examples/NCrystal/NCrystal_example/NCrystal_example.instr . | |
| clang --version | |
| mpirun --version | |
| ncrystal-config --version | |
| if [ "x$(uname)" == "xLinux" ]; then | |
| export NUM_MPI=2 | |
| else | |
| export NUM_MPI=1 | |
| fi | |
| ../install_mcstas/bin/${MCRUN_EXECUTABLE} --mpi=${NUM_MPI} NCrystal_example.instr sample_cfg="Y2O3_sg206_Yttrium_Oxide.ncmat\;density=0.6x" | |
| - name: Launch NeXus test instrument | |
| id: nexus-test | |
| if: runner.os == 'Linux' # Linux only | |
| # Status: Works on Linux (NeXus packages w/napi.h missing on mac+Windows) | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| sudo apt-get update | |
| sudo apt-get -y install libnexus-dev | |
| export MCSTAS_EXECUTABLE="mcstas" | |
| export MCRUN_EXECUTABLE="mcrun" | |
| export PATH=${PATH}:${PWD}/install_mcstas/bin/:${PWD}/install_mcstas/mcstas/3.99.99/bin/ | |
| if [ "x$(uname | cut -f1 -d_)" == "xMINGW64" ]; | |
| then | |
| export MCSTAS_EXECUTABLE="mcstas.exe" | |
| export MCRUN_EXECUTABLE="mcrun.bat" | |
| fi | |
| test -f ./install_mcstas/bin/${MCSTAS_EXECUTABLE} | |
| ./install_mcstas/bin/${MCSTAS_EXECUTABLE} --version | |
| mkdir run_templateSANS_Mantid && cd run_templateSANS_Mantid | |
| cp ../install_mcstas/share/mcstas/resources/examples/Mantid/templateSANS_Mantid/templateSANS_Mantid.instr . | |
| #Not a final solution!!!: | |
| #if [ "x$(uname)" == "xDarwin" ]; then export MCSTAS_CC_OVERRIDE=/usr/bin/clang; fi | |
| if [ "x$(uname)" == "xLinux" ]; then | |
| ../install_mcstas/bin/${MCRUN_EXECUTABLE} --format=NeXus --IDF templateSANS_Mantid.instr lambda=6 | |
| ../install_mcstas/bin/${MCRUN_EXECUTABLE} -c --mpi=2 --format=NeXus --IDF templateSANS_Mantid.instr lambda=6 | |
| fi | |
| - name: 'Tar output files' | |
| id: tar-package | |
| if: always() | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| tar cvfz mcstas-${{ matrix.os }}.${{ matrix.CC }}.python-${{ matrix.python }}_output.tgz run_* | |
| - name: 'Upload Artifact' | |
| id: tar-upload | |
| uses: actions/upload-artifact@v4 | |
| if: always() | |
| with: | |
| name: mcstas-artefacts-${{ matrix.os }}.${{ matrix.CC }}.python-${{ matrix.python }} | |
| path: "mcstas-${{ matrix.os }}.${{ matrix.CC }}.python-${{ matrix.python }}_output.tgz" | |
| - name: Setup tmate session for manual debugging | |
| uses: mxschmitt/action-tmate@v3 | |
| if: always() && (inputs.manual-debugging == true && steps.tar-package.outcome != 'success') | |
| with: | |
| limit-access-to-actor: true |