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Add age of air diagnostic functionality #1735

Add age of air diagnostic functionality

Add age of air diagnostic functionality #1735

name: Pull request checks
on:
pull_request:
push:
branches:
- "main"
workflow_dispatch:
# Cancel running pull request checks if another commit is pushed.
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
tests:
runs-on: ubuntu-latest
strategy:
matrix:
py-ver: ["py310", "py311", "py312", "py313"]
steps:
- name: Checkout code
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
- name: Cache conda environment
id: conda-env-cache
uses: actions/cache@6849a6489940f00c2f30c0fb92c6274307ccb58a
with:
key: conda|${{runner.os}}-${{runner.arch}}|${{ hashFiles(format('requirements/locks/{0}-lock-linux-64.txt', matrix.py-ver)) }}
path: |
~/conda-env
~/.local/share/cartopy
- name: Create conda environment
if: steps.conda-env-cache.outputs.cache-hit != 'true'
run: |
# Check cache hasn't pulled a partial key match.
test ! -e "${HOME}/conda-env"
conda create --prefix="${HOME}/conda-env" --file=requirements/locks/${{ matrix.py-ver }}-lock-linux-64.txt
- name: Add conda environment to PATH
run: echo "${HOME}/conda-env/bin" >> $GITHUB_PATH
- name: Run tests
env:
PY_COLORS: "1"
run: |
# Install package and run pytest.
echo '::group::Installing local package'
python3 -m pip install -e .
echo '::endgroup::'
pytest --verbose --cov --cov-append --cov-config=pyproject.toml
mv .coverage ".coverage.${{ matrix.py-ver }}"
- uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882
with:
name: coverage-data-${{ matrix.py-ver }}
path: .coverage.*
retention-days: 1
include-hidden-files: true
coverage-report:
if: github.event_name == 'pull_request'
runs-on: ubuntu-latest
needs: tests
permissions:
contents: read
pull-requests: write
steps:
- name: Checkout code
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
- name: Setup python
uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b
with:
python-version: "3.x"
- name: Install coverage
run: python3 -m pip install coverage
- uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16
with:
pattern: coverage-data-*
merge-multiple: true
- name: Generate coverage report
run: |
coverage combine
coverage html
- name: Add report to PR
env:
GH_TOKEN: ${{ github.token }}
run: |
# This links to a hosted version of the HTML report.
tar -czf coverage-report.tar.gz htmlcov/
report_url="$(curl -sSf --data-binary @coverage-report.tar.gz https://tmpweb.net)"
badge_options="$(coverage json --fail-under=0 -qo - | jq -r .totals.percent_covered_display)%25-blue?style=for-the-badge"
echo "[![Coverage](https://img.shields.io/badge/coverage-${badge_options})](${report_url})" >> ${{ runner.temp }}/cov-report.md
# Edit last comment if it exists, else create new one.
if ! gh pr comment --edit-last ${{ github.head_ref }} --body-file ${{ runner.temp }}/cov-report.md ; then
gh pr comment ${{ github.head_ref }} --body-file ${{ runner.temp }}/cov-report.md
fi
- name: Check 95% minimum coverage
run: coverage report --fail-under=95
pre-commit:
runs-on: ubuntu-latest
steps:
- name: Checkout code
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
- name: Set up Python
uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b
with:
python-version: "3.x"
- uses: actions/cache@6849a6489940f00c2f30c0fb92c6274307ccb58a
with:
key: pre-commit|${{runner.os}}-${{runner.arch}}|${{ env.pythonLocation }}|${{ hashFiles('.pre-commit-config.yaml') }}
path: ~/.cache/pre-commit
- name: Set up pre-commit
run: python3 -m pip install pre-commit
- name: Run pre-commit
env:
RUFF_OUTPUT_FORMAT: github
run: pre-commit run --show-diff-on-failure --color=always --all-files
build-docs:
if: github.event_name == 'pull_request'
runs-on: ubuntu-latest
steps:
- name: Checkout code
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
- name: Cache conda environment
id: conda-env-cache
uses: actions/cache@6849a6489940f00c2f30c0fb92c6274307ccb58a
with:
key: conda|${{runner.os}}-${{runner.arch}}|${{hashFiles('requirements/locks/py312-lock-linux-64.txt')}}
path: |
~/conda-env
~/.local/share/cartopy
- name: Create conda environment
if: steps.conda-env-cache.outputs.cache-hit != 'true'
run: |
# Check cache hasn't pulled a partial key match.
test ! -e "${HOME}/conda-env"
conda create --prefix="${HOME}/conda-env" --file=requirements/locks/py312-lock-linux-64.txt
- name: Add conda environment to PATH
run: echo "${HOME}/conda-env/bin" >> $GITHUB_PATH
- name: Build documentation with Sphinx
run: |
# Install module so it can be imported during docs generation.
echo '::group::Installing local package'
python3 -m pip install .
echo '::endgroup::'
# Generate the documentation
echo '::group::Building the documentation'
sphinx-build -b html --color -W --keep-going "docs/source" "docs/build/html"
echo '::endgroup::'
- name: Upload documentation artifact
uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882
with:
name: html-docs
path: docs/build/html/
retention-days: 10
if-no-files-found: error