feat: Add support/config for InstanceSegmentationMask #5
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InstanceSegmentationMask
* chore(main): release apiv2 1.13.0 * chore: Updated [staging,prod] values.yaml image tags to sha-1db3cdf --------- Co-authored-by: czi-github-helper[bot] <95879977+czi-github-helper[bot]@users.noreply.github.com> Co-authored-by: czi-github-helper[bot] <+czi-github-helper[bot]@users.noreply.github.com>
seankmartin
reviewed
Sep 4, 2025
| @@ -93,6 +93,13 @@ annotations: OPTIONAL | |||
| delimiter: OPTIONAL, STRING (DEFAULT ',') | |||
| parent_filters: see InstanceSegmentation.parent_filters | |||
| exclude: SEE InstanceSegmentation.exclude | |||
| - InstanceSegmentationMask: | |||
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I see for the instance seg there is:
- InstanceSegmentation:
file_format: REQUIRED, STRING
# NOTE: glob_string and glob_strings are mutually exclusive, exactly one is REQUIRED
glob_string: OPTIONAL, STRING (REGEX)
glob_strings:
- OPTIONAL, STRING (REGEX)
is_visualization_default: OPTIONAL, BOOLEAN (DEFAULT FALSE)
is_portal_standard: OPTIONAL, BOOLEAN (DEFAULT FALSE)
binning: OPTIONAL, FLOAT (DEFAULT 1) (POSITIVE)
filter_value: OPTIONAL, STRING
order: OPTIONAL, STRING (DEFAULT xyz)
we should check if binning, order, filter_value, is_portal_standard should be included
schema/core/v1.1.0/metadata.yaml
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| @@ -629,6 +629,13 @@ classes: | |||
| description: File and sourcing data for an instance segmentation annotation. Annotation that identifies individual instances of object shapes. | |||
| attributes: # no extended attributes | |||
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| AnnotationInstanceSegmentationMaskFile: | |||
| is_a: AnnotationOrientedPointFile | |||
schema/core/v1.1.0/metadata.yaml
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| aliases: | ||
| - InstanceSegmentationMask | ||
| description: File and sourcing data for an instance segmentation mask annotation. Annotation that identifies individual instances of object shape masks. | ||
| attributes: # no extended attributes |
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This we should check, likely possibilities are:
labels
scale_factor
| @@ -775,6 +775,13 @@ classes: | |||
| description: File and sourcing data for an instance segmentation annotation. Annotation that identifies individual instances of object shapes. | |||
| attributes: # no extended attributes | |||
|
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| AnnotationInstanceSegmentationMaskFile: | |||
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Do we modify both the 1.1.0 version and the 2.0.0 or just the 2.0?
…c) (chanzuckerberg#535) * fix CTF import (maps to tiltseries section index rather than mdoc) * fix tests
…erberg#534) fix dose rate and total flux for ml challenge data.
…rg#494) * SABER annotation deposition. * lint * fix run name retrieval * fix source definition. * fix files names * add keyphoto * Empty commit to trigger workflow.
* minicell config setup. * update dates and fix tilt axis * fix dates * annotations need rescaling * some additional description fixes * fix dose rate * update deposition date to push up in table. * add ctfs * fix CTF import (maps to tiltseries section index rather than mdoc) * fix tests
* chore(main): release apiv2 1.13.1 * chore: Updated [staging,prod] values.yaml image tags to sha-710a5f2 --------- Co-authored-by: czi-github-helper[bot] <95879977+czi-github-helper[bot]@users.noreply.github.com> Co-authored-by: czi-github-helper[bot] <+czi-github-helper[bot]@users.noreply.github.com>
…ackend into feature/CC-429
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