-
Notifications
You must be signed in to change notification settings - Fork 7
Data per sampling site
renzo edited this page May 22, 2015
·
1 revision
How to find the sequence data of your site of interest? The easiest can be to simply do the following:
- [go to the ENA home page] (http://www.ebi.ac.uk/ena)
- type the OSD site ID into the search box on the top right-hand side and click 'search', e.g. OSD3
- look at the Read domain results, here you will find 3 results
- click on 'View all 3 results'
- view the list of Run accessions, here you will find ERR771016 (shotgun), ERR867760 (16S amplicon) and ERR867761 (18S amplicon)
- click on the Run accession of interest to view details or download data, e.g. http://www.ebi.ac.uk/ena/data/view/ERR771016 (note, from this page you can also navigate to the sample metadata by clicking on the Attributes tab in the corresponding Sample accession, e.g. http://www.ebi.ac.uk/ena/data/view/ERS667665
Search for data associated with specific metadata can be done using the ENA Advanced search in the Sample domain, i.e. http://www.ebi.ac.uk/ena/data/warehouse/search