Update to v0.4.11, fix tests related to numpy2 & add Newton's law of cooling example #2461
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| name: CI | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| push: | |
| release: | |
| types: | |
| - published | |
| jobs: | |
| pre-commit: | |
| name: Format | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - uses: pre-commit/[email protected] | |
| with: | |
| extra_args: --hook-stage manual --all-files | |
| checks: | |
| name: Check Python ${{ matrix.python-version }} on ${{ matrix.runs-on }} | |
| runs-on: ${{ matrix.runs-on }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: [ "3.9", "3.10", "3.11"] | |
| runs-on: [ubuntu-latest, macos-latest, windows-latest] | |
| exclude: | |
| - runs-on: macos-latest | |
| python-version: "3.9" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # Rely on version of modelspec from PyPI as set by setup.cfg... | |
| #- name: Install modelspec | |
| # run: python -m pip install git+https://github.com/ModECI/modelspec.git@main | |
| # Rely on version of NeuroMLlite from PyPI as set by setup.py... | |
| # - name: Install NeuroMLlite | |
| # run: python -m pip install NeuroMLlite>=0.5.0 | |
| # Rely on version of PsyNeuLink from PyPI as set by setup.py... | |
| #- name: Install specific PsyNeuLink branch | |
| # run: python -m pip install git+https://github.com/ModECI/PsyNeuLink@devel | |
| - name: Install HDF5 for pytables on macos-14/latest | |
| if: ${{ matrix.runs-on == 'macos-latest' }} | |
| run: | | |
| brew install hdf5 | |
| - name: Install core package | |
| run: | | |
| pip install 'numpy<2.0.0' # due to lingering issues with other modules & numpy v2... | |
| python -m pip install .[dev] | |
| - name: Version info for installed packages | |
| run: | | |
| pip list | |
| - name: Test core package | |
| run: | | |
| python -m pytest -m coremdf tests/ | |
| - name: Install most optional dependencies | |
| run: | | |
| python -m pip install .[optional] | |
| - name: Version info for optional installed packages | |
| run: | | |
| pip list | |
| - name: Install graphviz | |
| uses: ts-graphviz/setup-graphviz@v2 | |
| with: | |
| # Skip to run brew update command on macOS. | |
| macos-skip-brew-update: 'true' # default false | |
| - name: Test interface ACT-R | |
| run: | | |
| python -m pytest -v -m "actr" tests/ | |
| - name: Test interface PyTorch | |
| run: | | |
| python -m pytest -v -m "pytorch" tests/ | |
| - name: Test interface NeuroML | |
| run: | | |
| python -m pip install .[neuroml] | |
| python -m pytest -v -m "neuroml" tests/ | |
| - name: Test interface TensorFlow | |
| run: | | |
| python -m pip install .[tensorflow] | |
| dot -V | |
| python -m pytest -v -m "tensorflow" tests/ | |
| - name: Test interface PsyNeuLink | |
| run: | | |
| python -m pip install .[psyneulink] | |
| python -m pytest -v -m "psyneulink" tests/ | |
| - name: Build Documentation | |
| run: | | |
| cd docs | |
| python generate.py | |
| cd sphinx | |
| make clean | |
| make html | |
| - name: Final version info for optional installed packages | |
| run: | | |
| pip list | |
| dist: | |
| name: Distribution build | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Build sdist and wheel | |
| run: pipx run --spec build pyproject-build | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| path: dist | |
| - uses: pypa/[email protected] | |
| if: github.event_name == 'release' && github.event.action == 'published' | |
| with: | |
| user: __token__ | |
| # Remember to generate this and set it in "GitHub Secrets" | |
| password: ${{ secrets.pypi_password }} |