Use latest nml libraries; Regenerated multiple nml files

ModECI · Sep 6, 2023 · 372050c · 372050c
1 parent f36655f
commit 372050c
Show file tree

Hide file tree

Showing 17 changed files with 19 additions and 18 deletions.
diff --git a/examples/NeuroML/ABCD.net.nml b/examples/NeuroML/ABCD.net.nml
@@ -1,5 +1,5 @@
 <neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="ABCD">
-    <notes>Generated by NeuroMLlite v0.5.5
+    <notes>Generated by NeuroMLlite v0.5.6
     Generated network: ABCD
     Generation seed: 1234
     NeuroMLlite parameters:

diff --git a/examples/NeuroML/FN.json b/examples/NeuroML/FN.json
@@ -1,6 +1,6 @@
 {
     "FN": {
-        "version": "NeuroMLlite v0.5.5",
+        "version": "NeuroMLlite v0.5.6",
         "notes": "FitzHugh Nagumo cell model - originally specified in NeuroML/LEMS",
         "parameters": {
             "initial_w": 0.0,

diff --git a/examples/NeuroML/FN.net.nml b/examples/NeuroML/FN.net.nml
@@ -1,5 +1,5 @@
 <neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="FN">
-    <notes>Generated by NeuroMLlite v0.5.5
+    <notes>Generated by NeuroMLlite v0.5.6
     Generated network: FN
     Generation seed: 1234
     NeuroMLlite parameters:

diff --git a/examples/NeuroML/IzhikevichTest.net.nml b/examples/NeuroML/IzhikevichTest.net.nml
@@ -1,5 +1,5 @@
 <neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="IzhikevichTest">
-    <notes>Generated by NeuroMLlite v0.5.5
+    <notes>Generated by NeuroMLlite v0.5.6
     Generated network: IzhikevichTest
     Generation seed: 1234
     NeuroMLlite parameters:

diff --git a/examples/NeuroML/IzhikevichTest.nmllite.yaml b/examples/NeuroML/IzhikevichTest.nmllite.yaml
@@ -1,5 +1,5 @@
 IzhikevichTest:
-    version: NeuroMLlite v0.5.5
+    version: NeuroMLlite v0.5.6
     notes: Example Izhikevich
     parameters:
         N: 1

diff --git a/examples/NeuroML/LEMS_SimABCD.xml b/examples/NeuroML/LEMS_SimABCD.xml
@@ -2,7 +2,7 @@
 
     <!--
 
-        This LEMS file has been automatically generated using PyNeuroML v1.0.8 (libNeuroML v0.5.1)
+        This LEMS file has been automatically generated using PyNeuroML v1.0.10 (libNeuroML v0.5.3)
 
      -->
 

diff --git a/examples/NeuroML/LEMS_SimFN.xml b/examples/NeuroML/LEMS_SimFN.xml
@@ -2,7 +2,7 @@
 
     <!--
 
-        This LEMS file has been automatically generated using PyNeuroML v1.0.8 (libNeuroML v0.5.1)
+        This LEMS file has been automatically generated using PyNeuroML v1.0.10 (libNeuroML v0.5.3)
 
      -->
 

diff --git a/examples/NeuroML/LEMS_SimIzhikevichTest.xml b/examples/NeuroML/LEMS_SimIzhikevichTest.xml
@@ -2,7 +2,7 @@
 
     <!--
 
-        This LEMS file has been automatically generated using PyNeuroML v1.0.8 (libNeuroML v0.5.1)
+        This LEMS file has been automatically generated using PyNeuroML v1.0.10 (libNeuroML v0.5.3)
 
      -->
 

diff --git a/examples/NeuroML/PyNN/HH.net.nml b/examples/NeuroML/PyNN/HH.net.nml
@@ -1,5 +1,5 @@
 <neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="HH">
-    <notes>Generated by NeuroMLlite v0.5.5
+    <notes>Generated by NeuroMLlite v0.5.6
     Generated network: HH
     Generation seed: 1234
     NeuroMLlite parameters:

diff --git a/examples/NeuroML/PyNN/InputWeights.net.nml b/examples/NeuroML/PyNN/InputWeights.net.nml
@@ -1,5 +1,5 @@
 <neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="InputWeights">
-    <notes>Generated by NeuroMLlite v0.5.5
+    <notes>Generated by NeuroMLlite v0.5.6
     Generated network: InputWeights
     Generation seed: 1234
     NeuroMLlite parameters:

diff --git a/examples/NeuroML/PyNN/Net1.net.nml b/examples/NeuroML/PyNN/Net1.net.nml
@@ -1,5 +1,5 @@
 <neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="Net1">
-    <notes>Generated by NeuroMLlite v0.5.5
+    <notes>Generated by NeuroMLlite v0.5.6
     Generated network: Net1
     Generation seed: 1234
     NeuroMLlite parameters:

diff --git a/examples/NeuroML/PyNN/OneCell.net.nml b/examples/NeuroML/PyNN/OneCell.net.nml
@@ -1,5 +1,5 @@
 <neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="OneCell">
-    <notes>Generated by NeuroMLlite v0.5.5
+    <notes>Generated by NeuroMLlite v0.5.6
     Generated network: OneCell
     Generation seed: 1234
     NeuroMLlite parameters:

diff --git a/examples/NeuroML/PyNN/SimpleNet.net.nml b/examples/NeuroML/PyNN/SimpleNet.net.nml
@@ -1,5 +1,5 @@
 <neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="SimpleNet">
-    <notes>Generated by NeuroMLlite v0.5.5
+    <notes>Generated by NeuroMLlite v0.5.6
     Generated network: SimpleNet
     Generation seed: 1234
     NeuroMLlite parameters:

diff --git a/examples/NeuroML/SimABCD.json b/examples/NeuroML/SimABCD.json
@@ -1,6 +1,6 @@
 {
     "SimABCD": {
-        "version": "NeuroMLlite v0.5.5",
+        "version": "NeuroMLlite v0.5.6",
         "network": "ABCD.json",
         "duration": 5000.0,
         "dt": 100.0,

diff --git a/examples/NeuroML/SimFN.json b/examples/NeuroML/SimFN.json
@@ -1,6 +1,6 @@
 {
     "SimFN": {
-        "version": "NeuroMLlite v0.5.5",
+        "version": "NeuroMLlite v0.5.6",
         "network": "FN.json",
         "duration": 100.0,
         "dt": 0.05,

diff --git a/examples/NeuroML/SimIzhikevichTest.yaml b/examples/NeuroML/SimIzhikevichTest.yaml
@@ -1,5 +1,5 @@
 SimIzhikevichTest:
-    version: NeuroMLlite v0.5.5
+    version: NeuroMLlite v0.5.6
     network: IzhikevichTest.nmllite.yaml
     duration: 700.0
     dt: 0.025

diff --git a/setup.cfg b/setup.cfg
@@ -59,8 +59,9 @@ psyneulink =
     psyneulink
 
 neuroml =
-    pyNeuroML>=0.5.20
-    neuromllite>=0.5.2
+    pyNeuroML>=1.0.10
+    neuromllite>=0.5.6
+    PyNN==0.10.1
 
 
 tensorflow =
-Original file line number
+Diff line change
@@ Expand Up / @@ -2,7 +2,7 @@ @@
         <!--
-            This LEMS file has been automatically generated using PyNeuroML v1.0.8 (libNeuroML v0.5.1)
+            This LEMS file has been automatically generated using PyNeuroML v1.0.10 (libNeuroML v0.5.3)
          -->
@@ Expand Down @@