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@ModelEngineering

Model Engineering

Tools to improve productivity of kinetics modeling of biological systems.

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  1. advancing-biomedical-models advancing-biomedical-models Public

    Topics course on tools for kinetics modeling

    Jupyter Notebook 3 6

  2. SBMLLint SBMLLint Public

    Model checker for SBML compliant models.

    Python 2 3

  3. ExplorerSB ExplorerSB Public

    Explore models in systems biology

    Component Pascal 2

  4. TemplateSB TemplateSB Public

    Template preprocessor for kinetics models.

    Python 1

  5. SBMLKinetics SBMLKinetics Public

    Repository of tests to validate kinetics expressions in SBML models.

    Python 1 2

  6. controlSBML controlSBML Public

    Analyze and design feedback control for SBML models

    Jupyter Notebook 1 2

Repositories

Showing 10 of 20 repositories
  • controlSBML Public

    Analyze and design feedback control for SBML models

    ModelEngineering/controlSBML’s past year of commit activity
    Jupyter Notebook 1 MIT 2 0 0 Updated Feb 11, 2025
  • pySubnetSB Public

    Structurally identical reaction networks

    ModelEngineering/pySubnetSB’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 10, 2025
  • ExplorerSB Public

    Explore models in systems biology

    ModelEngineering/ExplorerSB’s past year of commit activity
    Component Pascal 2 MIT 0 0 0 Updated Oct 28, 2024
  • BIOEN-437 Public
    ModelEngineering/BIOEN-437’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 1, 2024
  • SBMLKinetics Public

    Repository of tests to validate kinetics expressions in SBML models.

    ModelEngineering/SBMLKinetics’s past year of commit activity
    Python 1 MIT 2 0 0 Updated Apr 23, 2024
  • dash Public

    Exploring the use of dash as a front end for Biosimulations

    ModelEngineering/dash’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 2, 2023
  • Oscillators Public

    Investigation of oscillations in reaction networks

    ModelEngineering/Oscillators’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 23, 2023
  • fitterpp Public

    Extended fitter for fitting parameters.

    ModelEngineering/fitterpp’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 18, 2022
  • smarte Public

    Smart Parameter Estimation in Reaction Networks

    ModelEngineering/smarte’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Dec 13, 2022
  • SBMLModel Public

    Infrastructure for doing analysis using the python package Tellurium for simulations in Systems Biology

    ModelEngineering/SBMLModel’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 12, 2022
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